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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCAGGGCGCCAGGCCAGGCGAGGTGGTTCGGTTGACGAGTTCTTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGgtcagccctctcccggcctcggttggttctgctgattcgacctctctctttcgcctctgcgctcggttaggatcatgatccgattctgtttcgcttcggt...

Basic information

species Zea mays
transcript GRMZM2G162409_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149082534|gb|EE171729.2|EE171729
EST:     CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGC----G-GAG                         ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
genomic: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGgtcagccctc ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: gi|211106909|gb|FK992456.1|FK992456
EST:     CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAG                         ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
genomic: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGgtcagccctc ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: gi|74238708|gb|DT646622.1|DT646622
EST:     CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAG                         ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
genomic: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGgtcagccctc ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: gi|71426492|gb|DR807542.1|DR807542
EST:     CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAG                         ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
genomic: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGgtcagccctc ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG