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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAGTGACTCCGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcctggctcccctctcccccttccctcgccaatcgctcagatcccagggaccgacgcttgcgtgccgcttctccagatccctaaatctcacgccatttcttgaacccctcaacgcag

Basic information

species Zea mays
transcript GRMZM2G162292_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162292_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g38970.1 (Oryza sativa), 5'ss of exon 1
CAACAGTGACTCCGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcctggctcccctctcccccttccctcgccaatcgctcagatcccagggaccgacgcttgcgtgcc--gcttctccagatccc--taaatctcac--gccatttcttgaacccctcaacgcag-----------------
 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      ||  ||  ||  |     |  |||| |  |   || ||  | |    |     |  | || | ||   || ||||||||| |  | | | |     |   | ||| |  |   |     | |                 
GAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgttcgcctccgcgcggcctcccagatcccccctagtgaggggcgcatttgcttttgcttcgccttcgccttccttcctcctccagatctcgctgattttggttggttctctctcgcccttttttgttcggatcccggaggtgcgcag

upper sequence: GRMZM2G162292_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv16s0050g01050.t01 (Vitis vinifera), 5'ss of exon 1
CAACAGTGACTCCGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcctggctcccctctcccccttccctcgccaatcgctcagatcccagggaccgacgcttgcgtgccgcttctccagatccctaaatctcacgccatttcttgaacccctcaacgcag
 || |||| ||| ||||||||||||||||||||  | |||||||||   |||||||||||| | || |||||||| ||||| ||||||||||| || |||||  |         || |   |      ||| ||     |     | || |  | |   | |  |||  |     || |   | |   ||  | |     ||||| ||                
TAATAGTGGCTCAGAGAAGACGAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctt---------tctctctttataaatccgtctgtttttatctatatgc--gtggttgtcaattgt-tttgaattgttagggtttttatttttattttcatttttttttg------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211458568|gb|FL265854.1|FL265854
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458574|gb|FL265860.1|FL265860
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|20507385|gb|BQ279606.1|BQ279606
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGTGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|148946992|gb|EC892286.2|EC892286
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458579|gb|FL265865.1|FL265865
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAG
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAG
EST: gi|26456562|gb|CA828145.1|CA828145
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|74244398|gb|DT652312.1|DT652312
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|71436670|gb|DR817720.1|DR817720
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458570|gb|FL265856.1|FL265856
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|148955405|gb|EC900974.2|EC900974
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211461090|gb|FL265868.1|FL265868
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|26456759|gb|CA828342.1|CA828342
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|37416464|gb|CF645882.1|CF645882
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|76281802|gb|DV021370.1|DV021370
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458569|gb|FL265855.1|FL265855
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211355383|gb|FL265849.1|FL265849
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACG
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACG
EST: gi|211458581|gb|FL265867.1|FL265867
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458573|gb|FL265859.1|FL265859
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|113701452|gb|EE678956.1|EE678956
EST:     CTTCCACAGCGCCGTGCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: CTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|20803170|gb|BQ294220.1|BQ294220
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458578|gb|FL265864.1|FL265864
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|40303447|gb|CK347834.1|CK347834
EST:     CACAGCGCCGTGCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: CACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211355385|gb|FL265851.1|FL265851
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|148967884|gb|EE019185.2|EE019185
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|78080266|gb|DV508678.1|DV508678
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|76288414|gb|DV027982.1|DV027982
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|78105735|gb|DV524153.1|DV524153
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211355386|gb|FL265852.1|FL265852
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458577|gb|FL265863.1|FL265863
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGT
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGT
EST: gi|74239047|gb|DT646961.1|DT646961
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458576|gb|FL265862.1|FL265862
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|74236561|gb|DT644475.1|DT644475
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|78083904|gb|DV512297.1|DV512297
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458572|gb|FL265858.1|FL265858
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
EST: gi|211458567|gb|FL265853.1|FL265853
EST:     TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAG                         GTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC
genomic: TCTTCAAGGACCGCATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGgtagtgggcc ... ctcaacgcagGTCTATGGCGAGGACGAGTGGTCGTTCGGGTTCTGCGAGTCCGGCAGCGGC