1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGTGATTGGACTGAGGACTTTACACATTGCCTCATGTATGCACATACATCTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGGgtgagtagtttttccctattatggtgtttggagtttactcacaatgaatatatgaattaaatttgtgaggttcaagtagataagtttaattgtgttaaca...
species | Zea mays |
transcript | GRMZM2G162251_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGG GTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCCEST: gi|78117505|gb|DV535892.1|DV535892
genomic: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGGgtgagtagtt ... cacattgcagGTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCC
EST: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGG GTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCCEST: gi|76920903|gb|DV168364.1|DV168364
genomic: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGGgtgagtagtt ... cacattgcagGTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCC
EST: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGG GTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCCEST: gi|148962220|gb|EE013038.2|EE013038
genomic: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGGgtgagtagtt ... cacattgcagGTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCC
EST: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGG GTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCCEST: gi|50327000|gb|CO522126.1|CO522126
genomic: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGGgtgagtagtt ... cacattgcagGTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCC
EST: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGG GTACAGTGCATCACTGGCTTGTGCTGATTEST: gi|74235834|gb|DT643748.1|DT643748
genomic: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGGgtgagtagtt ... cacattgcagGTACAGTGCATCACTGGCTTGTGCTGATT
EST: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGG GTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCCEST: gi|78076120|gb|DV504554.1|DV504554
genomic: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGGgtgagtagtt ... cacattgcagGTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCC
EST: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGG GTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCC
genomic: CTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGGgtgagtagtt ... cacattgcagGTACAGTGCATCACTGGCTTGTGCTGATTGTGGTTTGGCTTTGTGGAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGATTGGACTGAGGACTTTACACATTGCCTCATGTATGCACATACATCTTCAGGCTAAAAGAAATGGACAGATCCAGTTCTGGTTCTTGTGGTCAGGgtgagtagtttttccctattatggtgtttggagtttactcacaatgaatatatgaattaaatttgtgaggttcaagtagataagtttaattgtgttaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA