1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGTGCTCGCCTACCGCTGCCTCGTCCCCGAGGACAACGTCGACGCCCCCAGCTTCCTCTTCGAGTCCGTCGAGCAGGGGCCCCAGGGCACCACCAACGTCgtacgtgcctcatgttccctgtcaaatctgctgctctctttatcgaatttcatcccccgtcaagagctcgcggtcgccatgcgggactgattggattggattgcag
species | Zea mays |
transcript | GRMZM2G161337_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTTCCTCTTCGAGTCCGTCGAGCAGGGGCCCCAGGGCACCACCAACGTC GGCCGCTACAGCATGGTGGGAGCCCACCCAGTGATGGAGATTGTGGCCAAAEST: gi|148939627|gb|EC884266.2|EC884266
genomic: GCTTCCTCTTCGAGTCCGTCGAGCAGGGGCCCCAGGGCACCACCAACGTCgtacgtgcct ... tggattgcagGGCCGCTACAGCATGGTGGGAGCCCACCCAGTGATGGAGATTGTGGCCAAA
EST: GCTT-C-CTTCGAGTCCGTCGAGCAGGGGCCCCAGGGCACCACCAACGTC GGCCGCTACAGCATGGTGGGAGCCCACCCAGTGATGGAGATTGTGGCCAAAEST: gi|211111113|gb|FL390906.1|FL390906
genomic: GCTTCCTCTTCGAGTCCGTCGAGCAGGGGCCCCAGGGCACCACCAACGTCgtacgtgcct ... tggattgcagGGCCGCTACAGCATGGTGGGAGCCCACCCAGTGATGGAGATTGTGGCCAAA
EST: CTTCCNTCTTCGAGTCCGTCGAGCAGGGGCCCCAGGGCACCACCAACGTC GGCCGCTACAGCATGGTGGGAGCCCACC-AGTG
genomic: CTTCC-TCTTCGAGTCCGTCGAGCAGGGGCCCCAGGGCACCACCAACGTCgtacgtgcct ... tggattgcagGGCCGCTACAGCATGGTGGGAGCCCACCCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGCTCGCCTACCGCTGCCTCGTCCCCGAGGACAACGTCGACGCCCCCAGCTTCCTCTTCGAGTCCGTCGAGCAGGGGCCCCAGGGCACCACCAACGTCgtacgtgcctcatgttccctgtcaaatctgctgctctctttatcgaatttcatcccccgtcaagagctcgcggtcgccatgcgggactgattggattggattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG