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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCGCGTGGGTAACGAGTTTGCTCCGGACGGTAGCCTCCCGGCGGATATGATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtttagtttcactcgtcacggcttgctgcctccaaagtctcattgtttactcctcactccgtccctcttgttctaacatttttagagctaact...

Basic information

species Zea mays
transcript GRMZM2G160842_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160842_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 5'ss of exon 1
AGCCGCGTGGGTAACGAGTTTGCTCCGGACGGTAGCCTCCCGGCGGATATGATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtttagtttcactcgtcacggcttgctgcctccaaagtctcattgtttactcctcactccgtccctcttgttctaacatttttagagctaact
 |||||   || || | ||| ||  | | || | |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |   | | || | | | |  || |||  | |  |     || ||||  ||  | |    ||||        || |  || |  | |   ||      
CGCCGCCGTGGGAATGGGTTCGCCGCCGCCGATGGCCTCCCGGCCGATATGATCTACCGGTACAGCCGCCACCTCCTCCTCCCGGACTTCGGGGTCGAAGgttaa--gctcagctgctcaca-catggcgcgttatcgt---agcctcagcgt--agtggagactctagtgactttttgttagctatgtcgcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211107289|gb|FL028196.1|FL028196
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTATCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
EST: gi|211315595|gb|FL072344.1|FL072344
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTGTCACAGTCGTCGA
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGA
EST: gi|211108194|gb|FL028200.1|FL028200
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTATCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
EST: gi|211315592|gb|FL072341.1|FL072341
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTATCACAGTCGTCGATTTTAGTTGTTG
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTG
EST: gi|37423894|gb|CF649677.1|CF649677
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
EST: gi|211107290|gb|FL028197.1|FL028197
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTGTCACAKTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
EST: gi|149009441|gb|EE041457.2|EE041457
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
EST: gi|211107292|gb|FL028199.1|FL028199
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
EST: gi|78106504|gb|DV524922.1|DV524922
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
EST: gi|211108195|gb|FL028201.1|FL028201
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
EST: gi|89761475|gb|DY689476.1|DY689476
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
EST: gi|211107291|gb|FL028198.1|FL028198
EST:     GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAG                         GCCAGCGGAAGCTATCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT
genomic: GATCTACCGGTACAGCCGCCACCTCCTTCTCCCGGACTTCGGGGTCGAAGgtcagttgtt ... tttctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGGGCTGGAGGTT