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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGTCGCGCTCGGCCCCATCCAGTTCGGCTTCACCAGCGGCTTCTCCTCCCCGACCCAGGACGCCATGGTTCGGGACCTCAACCTCTCTATCTCCGAGgtaacgaagtaaccaataggccgtcctctcttagattctttttttttctttgttgaagaaccgtgcctgagtgtgaatactcaccgcgcgcgctctgcag

Basic information

species Zea mays
transcript GRMZM2G160504_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160504_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 1
CATCGTCGCGCTCGGCCCCATCCAGTTCGGCTTCACCAGCGGCTTCTCCTCCCCGACCCAGGACGCCATGGTTCGGGACCTCAACCTCTCTATCTCCGAGgtaacgaagtaaccaataggccgtcctctcttagattctttttttttctttgttgaagaaccgtgcctgagtgtgaatactcaccgcgcgcgctctgcag
|||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||  | || |||||||| ||||| |||||||||||  ||               ||  ||  | |   ||   |  ||    ||| | |       |     ||||||||   | | |   |     | |   
CATCGTCGCGCTCGGCCCCATCCAATTCGGATTCACCAGCGGCTTCTCCTCACCCACCCAGGACGCCATCATCCGCGACCTCAAGCTCTCCATCTCCGAGgtcccgtgcccgttccagctgcgatcttgcgtgcttttgctgcttcctcttgcttattgcgtttcttgtagtgtgaagttttatctttctgatgcag---

upper sequence: GRMZM2G160504_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 1
CATCGTCGCGCTCGGCCCCATCCAGTTCGGCTTCACCAGCGGCTTCTCCTCCCCGACCCAGGACGCCATGGTTCGGGACCTCAACCTCTCTATCTCCGAGgtaacgaagtaaccaataggccgtcctct-cttagattctttttttttctttgttgaagaaccgtgcctgagtgtgaatactcaccgcgcgc-gct-ctgcag
|||||||||||||||||||||||||||||| |||||  | ||||||||||||||||| |||||||||||  | || |||||| ||||| |  ||||||||||  |    |  ||  |    | || ||| ||| | |||||    || |               |   ||     ||||    ||  ||||| ||| ||||||
CATCGTCGCGCTCGGCCCCATCCAGTTCGGATTCACGGGGGGCTTCTCCTCCCCGACGCAGGACGCCATCATCCGAGACCTCGACCTCACCCTCTCCGAGgttgc----tgcccgcttcttcttcttcttcttcggttcttcccattacccccccccccctttttttttgtcc-cgaatctgaacgacgcgctgctgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148959411|gb|EC905439.2|EC905439
EST:     CCCCGACCCAGGACGCCATGGTTCGGGACCTCAACCTCTCTATCTCCGAG                         TTCTCGGCGTTCGGATCGCTGTCCAACGTCGGCGGCATGGTCGGGGCGATC
genomic: CCCCGACCCAGGACGCCATGGTTCGGGACCTCAACCTCTCTATCTCCGAGgtaacgaagt ... cgctctgcagTTCTCGGCGTTCGGATCGCTGTCCAACGTCGGCGGCATGGTCGGGGCGATC
EST: gi|78120837|gb|DV539221.1|DV539221
EST:     CCCCGACCCAGGACGCCATGGTTCGGGACCTCAACCTCTCTATCTCCGAG                         TTCTCGGCGTTCGGATCGCTGTCCAACGTCGGCGGCATGGTCGGGGCGATC
genomic: CCCCGACCCAGGACGCCATGGTTCGGGACCTCAACCTCTCTATCTCCGAGgtaacgaagt ... cgctctgcagTTCTCGGCGTTCGGATCGCTGTCCAACGTCGGCGGCATGGTCGGGGCGATC
EST: gi|149102783|gb|EE288131.2|EE288131
EST:     CCCCGACCCAGGACGCCATGGTTCGGGACCTCAACCTCTCTATCTCCGAG                         TTCTCGGCGTTCGGATCGCTGTCCAACGTCGGCGGCATGGTCGGGGCGATC
genomic: CCCCGACCCAGGACGCCATGGTTCGGGACCTCAACCTCTCTATCTCCGAGgtaacgaagt ... cgctctgcagTTCTCGGCGTTCGGATCGCTGTCCAACGTCGGCGGCATGGTCGGGGCGATC