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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGTCGCGCTCGGCCCCATCCAGTTCGGCTTCACCGGCGGCTACTCCTCCCCGACGCAGGCCAGCATCATCCGGGACCTCAACCTCTCCATCTCCGAGgcacgtcctcctgcatctctgcctctgacttccactacttcgtttttgccttttgctctttctctctcgctctggtctctttttgtctacaaccaaaccaataattgaccgcgccgccgccgcgcag

Basic information

species Zea mays
transcript GRMZM2G160460_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160460_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 1
CATCGTCGCGCTCGGCCCCATCCAGTTCGGCTTCACCGGCGGCTACTCCTCCCCGACGCAGGCCAGCATCATCCGGGACCTCAACCTCTCCATCTCCGAGgcacgtcctcctgcatctctgcctctgacttccactacttcgtttttgccttttgctctttctctctcgctctggtctctttttgtctacaaccaaaccaataattgaccgcgccgccgccgcgcag
|||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||| |  ||||||||| |||||| ||||| || |||||||||       | ||||    | || |||  ||||  || ||||| || | ||  || | |   | | |         | | ||||||||   || |  | | |        ||||| || || ||    
CATCGTCGCGCTCGGCCCCATCCAGTTCGGATTCACGGGGGGCTTCTCCTCCCCGACGCAGGACGCCATCATCCGAGACCTCGACCTCACCCTCTCCGAGgt------tgctgc----ccgcttctt-cttcttcttcttcggttcttcccattacccccccccccc--------tttttttttgtcccgaatctgaacga--------cgcgctgctgctgcag--

upper sequence: GRMZM2G160460_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 1
CATCGTCGCGCTCGGCCCCATCCAGTTCGGCTTCACCGGCGGCTACTCCTCCCCGACGCAGGCCAGCATCATCCGGGACCTCAACCTCTCCATCTCCGAGgcacgtcctcctgcatctctgcctctgacttccactacttcgtttttgccttttgctctttctctctcgctctggtctctttttgtctacaaccaaaccaataattgaccgcgccgccgccgcgcag
|||||||||||||||||||||||| ||||| |||||| |||||| |||||| || || |||| |  ||||||||| |||||||| ||||||||||||||||     ||     | |  | ||  |   ||| |     || | |  | ||| |||||  ||   | ||  | | || |    || | |    |  |  ||                           
CATCGTCGCGCTCGGCCCCATCCAATTCGGATTCACCAGCGGCTTCTCCTCACCCACCCAGGACGCCATCATCCGCGACCTCAAGCTCTCCATCTCCGAGgt---cccgtgcccgttccagctgcgatcttgcgtgcttttgctgcttcctcttgcttattgcgtttc-ttgtagtgtgaagttttatctttctgatgcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211032760|gb|FL421272.1|FL421272
EST:     CCCCGACGCAGGCCAGCATCATCCGGGACCTCAACCTCTCCATCTCCGAG                         TTCTCGGTGTTCGGCTCGCTGTCCAACGTGGGCGCCATGGTCGGGGCGATC
genomic: CCCCGACGCAGGCCAGCATCATCCGGGACCTCAACCTCTCCATCTCCGAGgcacgtcctc ... cgccgcgcagTTCTCGGTGTTCGGCTCGCTGTCCAACGTGGGCGCCATGGTCGGGGCGATC