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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGTCGCGCTCGGCCCCGTCCAGTTCGGCTTCACCAGCGGGTACTCGTCCCCGACGCAGGACGCCGTCATCCGGGACCTCAACCTCTCCATCTCAGAGgtactggcttcacgctcggcgttttcttctcgtctcaacttcaaatccaacaaatgatgatgaccgaccgagctccgcctccgtcacccccgcag

Basic information

species Zea mays
transcript GRMZM2G160430_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160430_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 1
CATCGTCGCGCTCGGCCCCGTCCAGTTCGGCTTCACCAGCGGGTACTCGTCCCCGACGCAGGACGCCGTCATCCGGGACCTCAACCTCTCCATCTCAGAGgtactggcttcacgctcggcgttttctt-ctcgtctcaacttcaaatccaacaaatgatgatgaccgaccgagc-tccgcctccgtcacccc--cgcag
||||||||||||||||||| |||| ||||| ||||||||||| | ||| || || || ||||||||| ||||||| |||||||| ||||||||||| ||||| | |    |   |  |  |   |||| |  |  |   || |   |||      | ||   |        ||  |     |   ||   |    ||||
CATCGTCGCGCTCGGCCCCATCCAATTCGGATTCACCAGCGGCTTCTCCTCACCCACCCAGGACGCCATCATCCGCGACCTCAAGCTCTCCATCTCCGAGgtcccgtgcccgttccagctgcgatcttgcgtgcttttgctgct--tcctcttgcttattgcgtttcttgtagtgtgaagttttatctttctgatgcag

upper sequence: GRMZM2G160430_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 1
CATCGTCGCGCTCGGCCCCGTCCAGTTCGGCTTCACCAGCGGGTACTCGTCCCCGACGCAGGACGCCGTCATCCGGGACCTCAACCTCTCCATCTCAGAGgt-actggcttcacgctcggcgttttcttctcgtctcaacttcaaatccaacaaatgatgatgaccgaccgagctccgcc--tccgtcacccccgcag
||||||||||||||||||| |||||||||| |||||  | || | ||| |||||||||||||||||| ||||||| |||||| ||||| || |||| |||||  ||| |  |    ||  | | ||||||   |||   | | |   ||  |      |  |      ||||       |    ||   |  | ||||
CATCGTCGCGCTCGGCCCCATCCAGTTCGGATTCACGGGGGGCTTCTCCTCCCCGACGCAGGACGCCATCATCCGAGACCTCGACCTCACCCTCTCCGAGgttgctgcccgcttcttcttcttcttcttcggttcttcccattacccccccccccctttttttttgtcccgaatctgaacgacgcgctgctgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148950294|gb|EC895853.2|EC895853
EST:     CCCCGACGCAGGACGCCGTCATCCGGGACCTCAACCTCTCCATCTCAGAG                         TTCTCGGCGTTCGGCTCGCTGTCCAACGTGGGCGCTATGGTCGGGGCGATC
genomic: CCCCGACGCAGGACGCCGTCATCCGGGACCTCAACCTCTCCATCTCAGAGgtactggctt ... acccccgcagTTCTCGGCGTTCGGCTCGCTGTCCAACGTGGGCGCTATGGTCGGGGCGATC
EST: gi|148956626|gb|EC902478.2|EC902478
EST:     CCCCGACGCAGGACGCCGTCATCCGGGACCTCAACCTCTCCATCTCAGAG                         TTCTCGGCGTTCGGCTCGCTGTCCAACGTGGGCGCTATGGTCGGGGCGATC
genomic: CCCCGACGCAGGACGCCGTCATCCGGGACCTCAACCTCTCCATCTCAGAGgtactggctt ... acccccgcagTTCTCGGCGTTCGGCTCGCTGTCCAACGTGGGCGCTATGGTCGGGGCGATC
EST: gi|101387699|gb|EB815864.1|EB815864
EST:     CCCCGACGCAGGACGCCGTCATCCGGGACCTCAACCTCTCCATCTCAGAG                         TTCTCGGCGTTCGGCTCGCTGTCCAACGTGGGCGCTATGGTCGGGGCGATC
genomic: CCCCGACGCAGGACGCCGTCATCCGGGACCTCAACCTCTCCATCTCAGAGgtactggctt ... acccccgcagTTCTCGGCGTTCGGCTCGCTGTCCAACGTGGGCGCTATGGTCGGGGCGATC