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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCGCTCCGCCGCTAGGGTTTTCAGGGATCCCGCCTCACACCGCCGCAAGGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgactcccacctatcctccttttaccttgtgcttacgatctcaggccttttctgtctgccttgtggtacatggccctggatactctgtcccgatt...

Basic information

species Zea mays
transcript GRMZM2G160351_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29544087|gb|CB604467.1|CB604467
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539790|gb|FL074705.1|FL074705
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|37383601|gb|CF628820.1|CF628820
EST:     GGACTCGCGACTGACGGAGCAACGGAGGAAGCAATTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|78119517|gb|DV537901.1|DV537901
EST:     GACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536788|gb|FL074697.1|FL074697
EST:     -GACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCA-SCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536789|gb|FL074698.1|FL074698
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|87153083|gb|DY397872.1|DY397872
EST:     ACGGACGGAGCAACGGAGGAAGCAATTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: ACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|45567703|gb|CK985703.1|CK985703
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536787|gb|FL074696.1|FL074696
EST:     -GACTCGCGACGGACGGAGCCACGGAGGAAGC-ACTACGCGGCAGSCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211542801|gb|FL074716.1|FL074716
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|83279028|gb|DV943036.1|DV943036
EST:     TCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: TCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|32909001|gb|CF013813.1|CF013813
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533772|gb|FL074676.1|FL074676
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533769|gb|FL074673.1|FL074673
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|44901275|gb|CK827820.1|CK827820
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|32849670|gb|CD989351.1|CD989351
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533768|gb|FL074672.1|FL074672
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211208959|gb|FL135252.1|FL135252
EST:     ACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: ACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|37375396|gb|CF624132.1|CF624132
EST:     CGGAGGAAGCAATTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGTCCTACTGTAAGAACAAGGAATGCAGG
genomic: CGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536780|gb|FL074689.1|FL074689
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536781|gb|FL074690.1|FL074690
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|32916543|gb|CF021355.1|CF021355
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|14190962|gb|BG833192.1|BG833192
EST:     AGCAACTACGCGGCAGCCATG                         GTGAAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAGCAAGGAATGCAG
genomic: AGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTG-AACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAG
EST: gi|211208960|gb|FL135253.1|FL135253
EST:     AACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: AACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539798|gb|FL074713.1|FL074713
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|5608389|gb|AI901966.1|AI901966
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|18654582|gb|BM499387.1|BM499387
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|14190968|gb|BG833198.1|BG833198
EST:     GACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCACGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAG
genomic: GACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCA-GCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAG
EST: gi|211536784|gb|FL074693.1|FL074693
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|32936368|gb|CF041187.1|CF041187
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|86471713|gb|DY238083.1|DY238083
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536778|gb|FL074687.1|FL074687
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539795|gb|FL074710.1|FL074710
EST:     -GACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCASSCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539787|gb|FL074702.1|FL074702
EST:     -GACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCASSCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539792|gb|FL074707.1|FL074707
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211208962|gb|FL135255.1|FL135255
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533775|gb|FL074679.1|FL074679
EST:     -GACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCA-SCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533779|gb|FL074683.1|FL074683
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|5915403|gb|AW053044.1|AW053044
EST:     CGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: CGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211542799|gb|FL074714.1|FL074714
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|60358028|gb|DN225001.1|DN225001
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539789|gb|FL074704.1|FL074704
EST:     -GACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCA-CCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|60397869|gb|DN230685.1|DN230685
EST:     ACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: ACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211542806|gb|FL074721.1|FL074721
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|14191283|gb|BG833513.1|BG833513
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539788|gb|FL074703.1|FL074703
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533778|gb|FL074682.1|FL074682
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACTTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211542803|gb|FL074718.1|FL074718
EST:     -GACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCA-SCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211542804|gb|FL074719.1|FL074719
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536782|gb|FL074691.1|FL074691
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211542802|gb|FL074717.1|FL074717
EST:     CGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCASCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: CGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536775|gb|FL074684.1|FL074684
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536783|gb|FL074692.1|FL074692
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539791|gb|FL074706.1|FL074706
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533776|gb|FL074680.1|FL074680
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|18654581|gb|BM499386.1|BM499386
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         G-GAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533777|gb|FL074681.1|FL074681
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|22489885|gb|BU049808.1|BU049808
EST:     AGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: AGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|5804549|gb|AI979519.1|AI979519
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533771|gb|FL074675.1|FL074675
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533767|gb|FL074671.1|FL074671
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211542805|gb|FL074720.1|FL074720
EST:     -GACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCA-SCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|113703634|gb|EE681138.1|EE681138
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539786|gb|FL074701.1|FL074701
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533774|gb|FL074678.1|FL074678
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539796|gb|FL074711.1|FL074711
EST:     -GACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCA-SCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536777|gb|FL074686.1|FL074686
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536786|gb|FL074695.1|FL074695
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533773|gb|FL074677.1|FL074677
EST:     -GACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCASSCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|15177340|gb|BI398279.1|BI398279
EST:     CGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: CGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211539785|gb|FL074700.1|FL074700
EST:     GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|3191848|gb|AI001294.1|AI001294
EST:     GACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536779|gb|FL074688.1|FL074688
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211533770|gb|FL074674.1|FL074674
EST:     -GACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCASSCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|211536776|gb|FL074685.1|FL074685
EST:     GGACTCGCGACGGACGGAGCCACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATRCAGG
genomic: GGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
EST: gi|4647694|gb|AI622769.1|AI622769
EST:     CGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATG                         GTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG
genomic: CGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 706

TATCGCTCCGCCGCTAGGGTTTTCAGGGATCCCGCCTCACACCGCCGCAAGGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGGAAGCACACCCTGCACAAGGTTACCCAGTACAAGAAAGGTAAGGATAGCC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 549

TATCGCTCCGCCGCTAGGGTTTTCAGGGATCCCGCCTCACACCGCCGCAAGGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGGAAGCACACCCTGCACAAGGTTACCCAGTACAAGAAAGGTAAGGATAGCC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 290

TATCGCTCCGCCGCTAGGGTTTTCAGGGATCCCGCCTCACACCGCCGCAAGGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGGAAGCACACCCTGCACAAGGTTACCCAGTACAAGAAAGGTAAGGATAGCC


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 456

TATCGCTCCGCCGCTAGGGTTTTCAGGGATCCCGCCTCACACCGCCGCAAGGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgact ... catttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGGAAGCACACCCTGCACAAGGTTACCCAGTACAAGAAAGGTAAGGATAGCC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATCGCTCCGCCGCTAGGGTTTTCAGGGATCCCGCCTCACACCGCCGCAAGGACTCGCGACGGACGGAGCAACGGAGGAAGCAACTACGCGGCAGCCATGgtcagcgactcccacctatcctccttttaccttgtgcttacgatctcaggccttttctgtctgccttgtggtacatggccctggatactctgtcccgatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actcccac