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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCCGAGTCGGAGATCCGCCAGCTCTGCACCGTCTCCCGCGAGATCTTCCTCAACCAACCCAACCTTCTCGAGCTCGAGGCGCCCATCAAGATCTGCGgtgcgtaccttacctccctatttctcgtctccggccggccgtggcagtagatctggtctgaccgggcggccagcttacgtatcgtgggactctggtgatc...

Basic information

species Zea mays
transcript GRMZM2G160237_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160237_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g16110.1 (Oryza sativa), 5'ss of exon 1
CTCTCCGAGTCGGAGATCCGCCAGCTCTGCACCGTCTCCCGCGAGATCTTCCTCAACCAACCCAACCTTCTCGAGCTCGAGGCGCCCATCAAGATCTGCGgtgcgta-----ccttacctccctatttctcgtctccggccggccgtggcagtagatctggtctgaccgggcggcc---agcttacgtatcgtgggactctggtgatc
|||||||||||||||||||||||||||||||| || ||||| || |||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||| |||      ||   || |||     |    | |   || ||||| |  ||||||||| | || ||| ||||||   ||||   |||| |||||     || ||  
CTCTCCGAGTCGGAGATCCGCCAGCTCTGCACTGTATCCCGAGAAATCTTCCTCAGCCAGCCCAATCTCCTCGAGCTCGAGGCGCCCATCAAGATCTGCGgtacgtgctcgcccccccccccccccccccaaaccctctcccgccgtcgt-gtagatctgctttggccgcgcggccgaaagctggtgtattgtggg-----ggaga--

upper sequence: GRMZM2G160237_T02 (Zea mays), 5'ss of exon 1
lower sequence: AT5G59160.2 (Arabidopsis thaliana), 5'ss of exon 1
CTCTCCGAGTCGGAGATCCGCCAGCTCTGCACCGTCTCCCGCGAGATCTTCCTCAACCAACCCAACCTTCTCGAGCTCGAGGCGCCCATCAAGATCTGCGgtgcgtaccttacctccct--atttctcgtctccggccggccgtggcagt---agatctg--gtctgaccgggcggccagcttacgtatcgtgggactctggtgatc
|||  |||||| |||||||| ||||| |||| ||||||  | ||||| || ||  | || || |||||||| |||||||| || || |||||||||||||||   |  | |  ||   |   ||| |  | |  ||   |   | |   |    ||||||  ||||     |   | |    |  |  ||||    |  ||      
CTCAACGAGTCTGAGATCCGTCAGCTTTGCATCGTCTCTAGAGAGATTTTTCTTCAACAGCCTAACCTTCTTGAGCTCGAAGCTCCTATCAAGATCTGCGgtaaatttcatctctttttcggtttttgatttatgggttgttttcgttttttgggatctgtggtcttttgtgattgtctttgtttgc-tcgtttagcgttg------

upper sequence: GRMZM2G160237_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv06s0004g05530.t01 (Vitis vinifera), 5'ss of exon 1
CTCTCCGAGTCGGAGATCCGCCAGCTCTGCACCGTCTCCCGCGAGATCTTCCTCAACCAACCCAACCTTCTCGAGCTCGAGGCGCCCATCAAGATCTGCGgtgcgtaccttacctccctatttctcgtctccggccggccgtggcagtagatctggtctgaccgggcggccagcttacgtatcgtgggactctggtgatc-----
||    ||||||||||||||||||||||| || || ||| | |||||||| ||  | || || || ||||| ||||| ||||| || || ||||||||||||||||    | |||    | || |  | |  ||  |   ||||  || ||| |||| |         |     |   || |   |||  | |   ||||     
CTGATGGAGTCGGAGATCCGCCAGCTCTGTACTGTTTCCAGAGAGATCTTTCTTCAGCAGCCTAATCTTCTTGAGCTGGAGGCACCAATTAAGATCTGCGgtgcgt----ttccttttaactttttcttttgggttgaatgtgg-ggttgatttggttttgtttttgtgatttttggagtttttgggggtttttaagatcttggt

upper sequence: GRMZM2G160237_T02 (Zea mays), 5'ss of exon 1
lower sequence: EDO97337 (Chlamydomonas reinhardtii), 5'ss of exon 1
CTCTCCGAGTCGGAGATCCGCCAGCTCTGCACCGTCTCCCGCGAGATCTTCCTCAACCAACCCAACCTTCTCGAGCTCGAGGCGCCCATCAAGATCTGCGgtgcgta--ccttacctc---cctatttct---cgtctccggccggccgtgg---cagtagatctggtctgaccgggcg-----gccagcttacgtatcgtgggactctggtgatc---
||  | |||   ||||| || | |||||||       ||   ||||||||  | | ||| |||||||| || ||||| ||||||||||||||||| |||||||||||  | |  |  |   |  |  |     ||    || || ||   ||   |  | |   | || |  | | ||       ||| | |   |     | |  || || | |    
CTGGCGGAGAATGAGATTCGTCTGCTCTGCTTGACGGCCAAGGAGATCTTTATGAGCCAGCCCAACCTGCTGGAGCTGGAGGCGCCCATCAAGATTTGCGgtgcgtaggcatggcagcgaacgaacgtgcgggcggtaacgacccgctacggggcccctgggcgttgtttttcggcgctccatcaccaacctgacttgtacgcgcttccggggctgcag

upper sequence: GRMZM2G160237_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ20637 (Selaginella moellendorffii), 5'ss of exon 1
CTCTCCGAGTCGGAGATCCGCCAGCTCTGCACCGTCTCCCGCGAGATCTTCCTCAACCAACCCAACCTTCTCGAGCTCGAGGCGCCCATCAAGATCTGCGgtgcgtaccttacctccctatttctcgtctccggccggccgtggcagtaga-tctggtctgaccgggcggccagcttacgtatcgtggg-actctggtgatc-
||||  || |||||| | || ||||| ||    ||||||   || |||||| |    || ||||| ||||| |||||||||||||||||||| ||||| |||  |  ||     |    ||| |    |||  | |   |   | ||| || | ||   |             || |   ||| ||      ||   |  || 
CTCTTGGAATCGGAGGTGCGGCAGCTTTGTGTGGTCTCCAAGGACATCTTCATGTCGCAGCCCAATCTTCTGGAGCTCGAGGCGCCCATCAAAATCTGTGgtaagctccgcgaatgagcattgcg---ctcaagtctagcagagaagtggactttgaggttttgttttcttttgcctgtttattgtctttgttccacttctct

upper sequence: GRMZM2G160237_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ32796 (Selaginella moellendorffii), 5'ss of exon 1
CTCTCCGAGTCGGAGATCCGCCAGCTCTGCACCGTCTCCCGCGAGATCTTCCTCAACCAACCCAACCTTCTCGAGCTCGAGGCGCCCATCAAGATCTGCGgtgcgtaccttacctccctatttctcgtctccggccggccgtggcagtaga-tctggtctgaccgggcggccagcttacgtatcgtgggactctggt-gatc-
||||  || |||||| | || ||||| ||    ||||||   || |||||| |    || ||||| ||||| |||||||||||||||||||| ||||| |||  |  ||     |    ||| |    |||  | |   |   | ||| || | ||   |             || |   ||| ||     | || | |||| 
CTCTTGGAATCGGAGGTGCGGCAGCTTTGTGTAGTCTCCAAGGACATCTTCATGTCGCAGCCCAATCTTCTGGAGCTCGAGGCGCCCATCAAAATCTGTGgtaagctccgcgaatgagcattgcg---ctcaagtctagcagagaagtggactttgaggttttgttttcttttgcgtgtttattgtctttgtttgtttgatct