1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTCCATATGGTTGGGTTTTCAATATGCATGCAGCTATCAAAAGTTTCTGATCGATGCTATGGTCTTACGCTATCACCTGGAGAAGAGATAATTGCTGTGgtatgccttaggcttttgtatccgacatctttttgttcaactgaactgttgctttcggtgaagatatgtgcataggctgcaattgacggctgtcttttttcag
species | Zea mays |
transcript | GRMZM2G160046_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCGATGCTATGGTCTTACGCTATCACCTGGAGAAGAGATAATTGCTGTG GTCCGCAGTTTGGATCTGAACCTTTTGAACCAGATGTATCAAGTCAGEST: gi|87155971|gb|DY400760.1|DY400760
genomic: ATCGATGCTATGGTCTTACGCTATCACCTGGAGAAGAGATAATTGCTGTGgtatgcctta ... cttttttcagGTCCGCAGTTTGGATCTGAACCTTTTGAACCAGATGTATCAAGTCAG
EST: ATCGATGCTATGGTCTTACGCTATCACCTGGAGAAGAGATAATTGCTGTG GTCCGCAGTTTGGATCTGAACCTTTTGAACCAGATGTATCAAGTCAGEST: gi|22521448|gb|BU080259.1|BU080259
genomic: ATCGATGCTATGGTCTTACGCTATCACCTGGAGAAGAGATAATTGCTGTGgtatgcctta ... cttttttcagGTCCGCAGTTTGGATCTGAACCTTTTGAACCAGATGTATCAAGTCAG
EST: ATCGATGCTATGGTCTTACGCTATCACCTGGAGAAGAGATAATTGCTGTG GTCCGCAGTTTGGATCTGAACCTTTTGAACCAGATGTATCAAGTCAG
genomic: ATCGATGCTATGGTCTTACGCTATCACCTGGAGAAGAGATAATTGCTGTGgtatgcctta ... cttttttcagGTCCGCAGTTTGGATCTGAACCTTTTGAACCAGATGTATCAAGTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCATATGGTTGGGTTTTCAATATGCATGCAGCTATCAAAAGTTTCTGATCGATGCTATGGTCTTACGCTATCACCTGGAGAAGAGATAATTGCTGTGgtatgccttaggcttttgtatccgacatctttttgttcaactgaactgttgctttcggtgaagatatgtgcataggctgcaattgacggctgtcttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA