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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCGCACTACCTCGCCCATAAGGCCCTCAACCACCGCTTCGTCTCCGGTGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAGgttagtacttgctgctactgcatcgacgcctcatagctctaaacctgcaccttttttccccttgtgcttctactagtagtacttctcggctggaaaccatgccctaaccaaaaaaaggacggaactttgcgttggatttctccag

Basic information

species Zea mays
transcript GRMZM2G159500_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159500_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g21030.1 (Oryza sativa), 5'ss of exon 1
ATCTCGCACTACCTCGCCCATAAGGCCCTCAACCACCGCTTCGTCTCCGGTGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAGgttagtacttgctgctactgcatcgacgcctcatagctctaaacctgcaccttttttccccttgtgcttctactagtagtacttctcggctggaaaccatgccctaaccaaaaaaaggacggaactttgcgttggatttctccag
 |||||||||||||| |||  |||||||||||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||| || | ||      || | |      |||    | ||  |   |  | |    |     | ||    |||   |     | |  || | ||      ||                                           
GTCTCGCACTACCTCACCCCCAAGGCCCTCAACCACCGCTTCTCCTCCGGCGTCATCGGCGACGTCGACCTCAACAAGTGCGAGCCATGGCACCTCCCAGgtttgttcctgaattctctccttttttttctc----cccttgattcgttcgtacgataaatctttgggcttacggatgagtttgcgtggtttgatttttggcag-----------------------------------------

upper sequence: GRMZM2G159500_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ11746 (Selaginella moellendorffii), 5'ss of exon 1
ATCTCGCACTACCTCGCCCATAAGGCCCTCAACCACCGCTTCGTCTCCGGTGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAGgttagtacttgctgctactgcatcgacgcctcatagctctaaacctgcaccttttttccccttgtgcttctactagtagtacttctcggctggaaaccatgccctaaccaaaaaa--aggacggaac-tttgcgttggatttctccag-------------------------------------------------
||| |   |||||||| | | |||| | |||||      |||||  |    | ||||| ||||||||| |||||||||| |||||||||||| || || ||| || |    ||    |  | ||     | |||     |  | |    ||| |    | || |   ||||     | | | ||   |  | | |  |||| | |  | |  ||    | |  || |  ||| || |  || |                                                      
ATCACCTTCTACCTCGTCAAGAAGGTCGTCAACACAAAATTCGTGGCGCACGCCATCGCCGAGGTCGATCTCAACAAGTTCGAGCCATGGGATCTACCCGgtaaggaggaactctctcatcttc--tctcgcattcgcttctatcatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcag

upper sequence: GRMZM2G159500_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ22540 (Selaginella moellendorffii), 5'ss of exon 1
ATCTCGCACTACCTCGCCCATAAGGCCCTCAACCACCGCTTCGTCTCCGGTGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAGgttagtacttgctgctactgcatcgacgcctcatagctctaaacctgcaccttttttccccttgtgcttctactagtagtacttctcggctggaaaccatgccctaaccaaaaaa--aggacggaac-tttgcgttggatttctccag-------------------------------------------------
||| |   |||||||| | | |||| | |||||      ||||   |    | ||||| ||||||||| |||||||||| |||||||||||| || || ||| || |    ||    |  | ||     | |||   | |  |      ||| |    | || |   ||||     | | | ||   |  | | |  |||| | |  | |  ||    | |  || |  ||| || |  || |                                                      
ATCACCTTCTACCTCGTCAAGAAGGTCGTCAACACAAAATTCGCGGCGCACGCCATCGCCGAGGTCGATCTCAACAAGTTCGAGCCATGGGATCTACCCGgtaaggaggaactctcccatcttc--tctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcag