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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg...

Basic information

species Zea mays
transcript GRMZM2G159397_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgc-cgggcagtggtcacacggcgctggagtgccttgg
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||  |        |     |   ||| | |  ||    | |   |      ||||  | |   | | |  ||     |  |    |  | || ||  |   
TCAAGAAGGCGTACGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCACCCAGAGgttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatct-

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA18G50900.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg-
||||||| || || ||||| || || ||||| || || ||||| || |||||||||||||||||||| |||||||| || |||||||  ||||     |||||| || | |   | | ||||  |  | ||          ||   |  | ||   |||       |    |    |    |   | ||   |        
TCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGAGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgca-gtgtttgtgtatgtgttgatccttttttttctagtttgctagctctgtttgtgaaatactaaaaccactttttctttgttgacctatgagatc

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G27670.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtataca-cgcgcg------cgcgcatgtactactactacccg--gcagcgtgcccgcggtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg
||||||| || || ||||| || || ||||| || || ||||| || |||||||||||||||||||| |||||||| || |||||||  ||||     |||||| ||  | | |      |     | | ||  | || | |   |     | |      |||| ||  |  ||  |  |  ||    |     |||  |         
TCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGgtatgcagtgtgtgttgatcctttttttttctgtttcttctctttgtgagatactgaaaatcactttttctttgttgacctatgagatctacttgctcca---------

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA19G04320.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtacta-ctactacccggcagcgtgcccgcg--gtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg
||||||| || || ||||| || || ||||| || || ||||| || |||||||||||||||| ||| |||||||| || || |||| ||||||  | ||||||      |        |||  ||  || ||   |    | |   |        |  |    |         | |  |      | | |   ||   |   
TCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCACCCGTGGCAAGCTTTATGAATTCTGCAGCACCAACAGgtatgtgt-tgtttttctttgttttaattattatttgcactcataatcatataaaaaattgaatgagtttctctaatctttgttttgtgttcaggtatatg--

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G08130.1 (Glycine max), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg---
|||||||||| || || ||||| || ||||| || || ||||| || ||||| |||||||||||||| ||||||||||| ||||||| |||    || ||||||   | | |     ||  |   ||  | | |        |     |       |||    ||      | ||       |    ||| | |  |||    
TCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCATAGgtat---ctcccatagccaaattacacatcaagcttttttgttagtgacacaacttttgtgtgtgaaaaagaatgtctttttgtgtttggggagttttgtttt

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT5G15800.1 (Arabidopsis thaliana), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg-------
| ||||| || || ||  | || || ||||| || || || || || |||||||||||||||||||| || |||||||| ||||| | |||| |    | ||| |||    | | | ||     ||  | |  |  | |  | |     | |     ||  |||    |    | ||| || ||   ||   |   | |        
TGAAGAAAGCTTATGAATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAAgtaaaca---actctctcactctttatcagtttcttg-attgagtttttgctagatctga-gct--tagatctttgtctcaaggacttgttatatatagatcacacg

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT3G02310.1 (Arabidopsis thaliana), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg------
| || || || || ||||| || || |||||||| || || ||| | |||||| ||||||||||||| ||||||||||||||||||| ||||||    | |||  |            ||  |||  |   | | |   |     |     |||  || |   |   | | |   ||   |     || || ||| ||        
TGAAAAAAGCTTATGAGCTTTCTGTTCTCTGCGATGCTGAAGTCTCTCTCATCGTCTTCTCCAACCGTGGCAAGCTCTACGAGTTCTGCAGCACCTCCAAgta--cttctctttctttatacacttattagatctgtgtgtagatct---ttcatttttctagtcttgtg-atgagttttatctttcttgattgctttttaacaaa

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv14s0083g01050.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc-gcgcgcgcatgtactactactacccggcagcgtgcccgcg-gtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg
||||||| || || |||||||| || || || || || |||||||| |||||||||||||||| ||| || |||||||| ||||||| |||||     ||||   | |   |    | | | | |||   |||| |     |     |||  |||  | |   |   | |     |      |      | |  ||  ||  
TCAAGAAAGCTTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTCGCTCTCATCATCTTCTCCACCCGTGGAAAGCTCTATGAGTTCTGCAGCAGCTCAAGgtcctctctttgattcctcttttcctatatctacgcatattcacaaacgcatgtcttcatattggatctgtttgatttcttgattttatttggttgattt--

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv01s0011g00110.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg
| |||||||| || ||||| || ||  | || || || ||||| ||||||||||| ||||||||||| |||||||| || ||||||| ||||      |||||||                | ||  ||   |         | | |        ||  |      |  ||     |  || |     ||  |   ||  
TGAAGAAGGCCTATGAGCTTTCAGTTTTGTGTGATGCTGAGGTTGCGCTCATCATTTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCGGCTCTAGgtatatttctttctctatcctttcttttatctcatctatctatacacttacatgtctatctatgtacatgcttgtctgccatgaacgcgggtttttttct

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv01s0010g03900.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgc-cgctgccgggcagtggtcacacggcgctggagtgccttgg-
|||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||  | || || ||||||||||||| ||| |    ||||||   || |  |     |   | ||  |  | ||   |       |    |  | || |      |    ||     ||   |     | | |   |    
TCAAGAAGGCGTACGAACTTTCGGTGCTCTGCGACGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacacaggaaaagaaaaagtagaa--aacctaaatttgatacaaacttgcttttcataacacaaaacacaaagcaagagaaaaggaaattgttctct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241219|gb|DT649133.1|DT649133
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|78180034|gb|DV550407.1|DV550407
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211229521|gb|FL030113.1|FL030113
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211012495|gb|FL323158.1|FL323158
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211402407|gb|FL354728.1|FL354728
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211333883|gb|FL365382.1|FL365382
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|76284475|gb|DV024043.1|DV024043
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|6918768|gb|AW400298.1|AW400298
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211231580|gb|FL030120.1|FL030120
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTNCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211509214|gb|FL030119.1|FL030119
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|50338646|gb|CO533772.1|CO533772
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211509212|gb|FL030117.1|FL030117
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTNCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|93282622|gb|EB674886.1|EB674886
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|67042829|gb|CO469084.1|CO469084
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|50338493|gb|CO533619.1|CO533619
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|67010834|gb|CO439583.1|CO439583
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|71772521|gb|DR970452.1|DR970452
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|88756808|gb|DY540949.1|DY540949
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|89247844|gb|DY619630.1|DY619630
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|74236154|gb|DT644068.1|DT644068
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211509213|gb|FL030118.1|FL030118
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|50338759|gb|CO533885.1|CO533885
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211010839|gb|FL363376.1|FL363376
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|149078371|gb|EE167144.2|EE167144
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|6918466|gb|AW399996.1|AW399996
EST:     CTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: CTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|109637403|gb|EC590948.1|EC590948
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|78093002|gb|DV521376.1|DV521376
EST:     ACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|148951164|gb|EC896844.2|EC896844
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|78093003|gb|DV521377.1|DV521377
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211330847|gb|FL319496.1|FL319496
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGG
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGG
EST: gi|71757422|gb|DR955359.1|DR955359
EST:     CCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCGTGA
genomic: CCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|50338891|gb|CO534017.1|CO534017
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211028753|gb|FL344465.1|FL344465
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211301782|gb|FL325999.1|FL325999
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|32867990|gb|CF007672.1|CF007672
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|109179245|gb|EC379888.1|EC379888
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|149098430|gb|EE184409.2|EE184409
EST:     CAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: CAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|149077648|gb|EE166352.2|EE166352
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|149105410|gb|EE290922.2|EE290922
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|78111103|gb|DV529500.1|DV529500
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|67029631|gb|CO458380.1|CO458380
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|148995802|gb|EE035033.2|EE035033
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211267567|gb|FL336180.1|FL336180
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|12046315|gb|BF728454.1|BF728454
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTAC
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTAC
EST: gi|211229522|gb|FL030114.1|FL030114
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211218046|gb|FL310370.1|FL310370
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAG
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAG
EST: gi|67017342|gb|CO446091.1|CO446091
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|76019607|gb|DT946777.1|DT946777
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|62525802|gb|DN828450.1|DN828450
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|50338644|gb|CO533770.1|CO533770
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|32866045|gb|CF005727.1|CF005727
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAG-NNNNNNNCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|149081319|gb|EE170433.2|EE170433
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|76291287|gb|DV030855.1|DV030855
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|149098431|gb|EE184410.2|EE184410
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|91874357|gb|EB404314.1|EB404314
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|148931272|gb|EC874097.2|EC874097
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCATAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|148995435|gb|EE034634.2|EE034634
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211058485|gb|FL335136.1|FL335136
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACCTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTG
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACAC-TTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTG
EST: gi|211229523|gb|FL030115.1|FL030115
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|148950936|gb|EC896571.2|EC896571
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|149110047|gb|EE293860.2|EE293860
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|67019373|gb|CO448122.1|CO448122
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|67010697|gb|CO439446.1|CO439446
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|88757755|gb|DY541896.1|DY541896
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|71757423|gb|DR955360.1|DR955360
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211112421|gb|FL337494.1|FL337494
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|50338743|gb|CO533869.1|CO533869
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACAAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCACTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|37426267|gb|CF650885.1|CF650885
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|108824286|gb|EC278294.1|EC278294
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|67026224|gb|CO454973.1|CO454973
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|108953949|gb|EC364944.1|EC364944
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|148949381|gb|EC894837.2|EC894837
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|211483294|gb|FL326637.1|FL326637
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
EST: gi|6127229|gb|AW129875.1|AW129875
EST:     ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAG                         CATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA
genomic: ATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 435

TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG


Block sizes: 36 (upstream exon), 47 (downstream exon)
Score: 10

TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 719

TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgc ... ctatctgcagCATGCCAAAAACACTTGAAAAGTACCAAAAATGCAGTTTTGCAGGGCCTGAAACAGCACTCCAGAATAGAGAGAATGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAAGAAGGCGTACGAGCTCTCGGTGCTCTGCGACGCCGAGGTCGCGCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTCCAGCACGCAGAGgtatacacgcgcgcgcgcatgtactactactacccggcagcgtgcccgcggtcaccttgccgctgccgggcagtggtcacacggcgctggagtgccttgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT