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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGGCAGGCACACTCCTGGTACATTCACCAACCAGTTGCAAACCTCCTTCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaacttatatctgttgaaagaaaaactagagcgtgcaactcggtttgctgattcagaggactttaaaatcttctttatccaaactttgtacag

Basic information

species Zea mays
transcript GRMZM2G159237_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159237_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g42450.1 (Oryza sativa), 5'ss of exon 2
TGCTGGCAGGCACACTCCTGGTACATTCACCAACCAGTTGCAAACCTCCTTCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaacttatatctgttgaaagaaaaactagagcgtgcaactcggtttgctgattcagaggactttaaaatcttctttatccaaactttgtacag
|||||| |||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||   | ||||  |        | |       || | | | |||  ||| || | ||| | ||  || | |  |  ||  | |||||||
TGCTGGTAGGCACACTCCTGGTACATTTACCAACCAGCTGCAGACCTCATTCAGTGAGCCACGCCTTCTTATCCTGACTGACCCCAGGACTGATCATCAGgtaagatttcagtatgtttgattgtttcttgg------taatttgatctgccaattgagtgcactctcaagcctgcctgttgtaa--tgtgtacag

upper sequence: GRMZM2G159237_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G01460.1 (Glycine max), 5'ss of exon 2
TGCTGGCAGGCACACTCCTGGTACATTCACCAACCAGTTGCAAACCTCCTTCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaa-acttatatctgtt--gaaagaaaaactagagcgtgcaactcggtttgctgattcagaggactttaaaatcttctttatccaaactttgtacag-----------------------------------------------------------
|||||| ||||||||||| ||||| |||||||| ||| | || || || ||||||||||| || || |||||||| ||||| || || || ||||| |||||  | ||  | ||| | |   || || | | | ||   |        ||    ||||| |  |      |  || |   ||||  |   | | | | |                                                           
TGCTGGAAGGCACACTCCCGGTACCTTCACCAATCAGCTTCAGACTTCGTTCAGTGAGCCTCGTCTCCTTATCCTCACTGATCCAAGAACAGATCACCAGgtggatacccaaatcagcttcaaatgatatatttgattttagttacttgtgctttgattgattgt-tgacatgatttatgttatgtatgttgtttgcggttgttgtggtgttgactgtgttgtgttgttaatgtgtgtgtttgttcgtttgtgtgcag

upper sequence: GRMZM2G159237_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G04890.1 (Glycine max), 5'ss of exon 2
TGCTGGCAGGCACACTCCTGGTACATTCACCAACCAGTTGCAAACCTCCTTCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaa------acttatatctgttg------aaagaaaaactagagcgtgcaactcggtttgc---tgattcagaggact-ttaaaatcttctttatccaaact--ttgtacag--------------------------------------------------------
|||||| ||||||||||||||||| |||||||| ||| | ||||| |||||||| ||||| || || ||||| || || || || || || ||||| ||||| |       | ||  || ||  |       ||||||||      | |   | ||   |  |   || ||     || | || |  |  | | |      | |  ||||  ||                                                        
TGCTGGAAGGCACACTCCTGGTACCTTCACCAATCAGCTTCAAACTTCCTTCAGCGAGCCTCGTCTCCTTATTCTTACCGATCCAAGAACAGATCACCAGgttagtaccctattttcatatgcagttatatgaagaaaaaaagatacatttgattctagtcacatgtggtttgattgattgttgatgtagtttatggtgtgattgtttgtttagggttgttgtattgcccgtgttgtgttgttaatgtatgtttgttggtttgtgtgcag

upper sequence: GRMZM2G159237_T03 (Zea mays), 5'ss of exon 1
lower sequence: AT1G72370.2 (Arabidopsis thaliana), 5'ss of exon 2
TGCTGGCAGGCACACTCCTGGTACATTCACCAACCAGTTGCAAACCTCCTTCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaacttatatctgttgaaagaaaaactagagcgtgcaactcggtttgctgattcagaggactttaaaatcttctttatccaaactttgtacag
|||||| || |||||||||||||| |||||||| ||| |||| || ||||||||||| ||| | ||  | || || |||||||| || ||||| || ||||||||   |  || || |  |   |  | | ||  |   ||     |||| | ||| | |    | |    | |  |  |                
TGCTGGAAGACACACTCCTGGTACCTTCACCAATCAGATGCAGACATCCTTCAGTGAACCAAGGCTGTTGATTCTTACTGACCCAAGAACTGACCACCAGgtaaactcttcatatgattcatatactagt-gattgattaatgatttttgtt-attgataaatgtcttgtgtgtgttgcag---------------

upper sequence: GRMZM2G159237_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv09s0002g00610.t01 (Vitis vinifera), 5'ss of exon 2
TGCTGGCAGGCACACTCCTGGTACATTCACCAACCAGTTGCAAACCTCCTTCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaa--acttatatctgttgaaagaaaaactagagcgtgcaactcgg-tttgctgattcagaggactttaaaatcttctttatccaaactttgtacag----
|||||| |||||||| || |||||||||||||| ||| | || || || ||||||||||| || ||||| ||||| || ||||| || |||||||| |||||||   | | | |    |    | |||  ||   |  |  |  | || |||   | ||||  | |  |    |   |  || | | | |     |  |    
TGCTGGAAGGCACACACCAGGTACATTCACCAATCAGCTCCAGACATCTTTCAGTGAGCCCCGTCTTCTCATCCTCACAGACCCAAGAACTGATCACCAGgtaagtgaataacacacatctttataaattct---gtttttagtttgggttttagggttcaaggaaggtgcgtagactactttttctagccaaccagggaaat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76908312|gb|DV162877.1|DV162877
EST:     AGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: AGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|22818897|gb|BU498987.1|BU498987
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|60396348|gb|DN229217.1|DN229217
EST:     GACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: GACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|76291477|gb|DV031045.1|DV031045
EST:     CGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: CGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|9566206|gb|BE475715.1|BE475715
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|32848576|gb|CD988257.1|CD988257
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCCCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|22541961|gb|BU092399.1|BU092399
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|22819797|gb|BU499887.1|BU499887
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTCGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|84980400|gb|DW530749.1|DW530749
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCCCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|87298795|gb|DY470798.1|DY470798
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|22472387|gb|BU036867.1|BU036867
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|76280595|gb|DV020163.1|DV020163
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|149102131|gb|EE287570.2|EE287570
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|211079787|gb|FK951931.1|FK951931
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCCCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|71311034|gb|DR791823.1|DR791823
EST:     CCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: CCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|22472873|gb|BU037353.1|BU037353
EST:     TCAGTTATCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|22489242|gb|BU049165.1|BU049165
EST:     TGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|211082513|gb|FK951932.1|FK951932
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCCCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|67030712|gb|CO459461.1|CO459461
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
EST: gi|60398004|gb|DN230820.1|DN230820
EST:     TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAG                         CCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT
genomic: TCAGTGAGCCACGCCTTCTTATCCTGACTGACCCGAGGACTGATCATCAGgtaaaactta ... ctttgtacagCCCATTAAGGAGTCTGCGCTTGGAAACATTCCCACCATCGCCTTCTGTGAT