ERISdb: a Database of Plant Splice Sites

General
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

ACGCCAGGCGCCCAGGCCAGTGGTCGACGCCTGTGGTGAGCTGATAGGCGATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgcgcttcttcccttcccatggcgattgatgattcagaataacatggcctttttcttttctttttttatccgtgttgggttcactagcagtttcctgatggctctcctcactattatggatctgcag

Basic information

species	Zea mays
transcript	GRMZM2G159134_T02
intron #	1
splice site	5'
intron type	U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211196957|gb|FK946829.1|FK946829

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTNAGGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGAT
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGT----T-GTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGAT

EST: gi|148971614|gb|EE022334.2|EE022334

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|94478141|gb|EB707099.1|EB707099

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|211196955|gb|FK946827.1|FK946827

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCARAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|211196959|gb|FK946831.1|FK946831

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCYGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|149094731|gb|EE180287.2|EE180287

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|148960517|gb|EE011119.2|EE011119

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|71299944|gb|DR786020.1|DR786020

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|71444236|gb|DR825286.1|DR825286

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|71764618|gb|DR962555.1|DR962555

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|211196956|gb|FK946828.1|FK946828

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|211196953|gb|FK946825.1|FK946825

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|78081603|gb|DV510015.1|DV510015

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|148953794|gb|EC899165.2|EC899165

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|211196958|gb|FK946830.1|FK946830

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|211196954|gb|FK946826.1|FK946826

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|211421166|gb|FK946834.1|FK946834

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAC                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|71311312|gb|DR791973.1|DR791973

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

EST: gi|71447377|gb|DR828427.1|DR828427

EST:     ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAG                         GTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG
genomic: ATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 47

ACGCCAGGCGCCCAGGCCAGTGGTCGACGCCTGTGGTGAGCTGATAGGCGATGTCGTCACCGTCTCCGGTGCTGGCAAGGGCTGCGCGTCTCACGTGTAGgtaaggtcgc ... ggatctgcagGTTGTGATCTTTCTGCCCAGAGATGTGCGATTTGTCTTCGCTTGATCTGAGTGACAGTAAAACGGAGACCGGCTAGTGTTGTTCCTGAAACCTGTTGATT

Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 31

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 46

Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 41

Data associated with selected splice site

Sequence

Basic information

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

RNA-Seq data