1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAACTGGAAAATAAGAATTCCATAGGAAAACGTGGTTTCCAAACTATTCTAAAAAATGGGCTAAAAAAAATCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcctatatcacagcatcagaaattcagaatcgatccgatctccgcttgcgctgagctccatcagattcaattctctgcag
species | Zea mays |
transcript | GRMZM2G158766_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGACCGTCTTCCTCCCAACCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAAEST: gi|211210960|gb|FL000155.1|FL000155
genomic: TCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
EST: TCGACCGCCTTCCTCCCAGCCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAAEST: gi|211014718|gb|FL072113.1|FL072113
genomic: TCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
EST: TCGACCGTCTTCCTCCCAACCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAAEST: gi|211014717|gb|FL072112.1|FL072112
genomic: TCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
EST: TCGACCGTCTTCCTCCCAACCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGATCAGCATCCACAACCACAAEST: gi|211017494|gb|FL072120.1|FL072120
genomic: TCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
EST: TCGACCGTCTTCCTCCCAACCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAAEST: gi|211210961|gb|FL000156.1|FL000156
genomic: TCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
EST: TCGACCGCCTTCCTCCCAGCCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAAEST: gi|211014716|gb|FL072111.1|FL072111
genomic: TCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
EST: TCGACCGTCTTCCTCCCAACCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAAEST: gi|211014721|gb|FL072116.1|FL072116
genomic: TCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
EST: TCGACCGTCTTCCTCCCAACCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAAEST: gi|211014722|gb|FL072117.1|FL072117
genomic: TCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
EST: TCGACCGTCTTCCTCCCAACCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAAEST: gi|211017495|gb|FL072121.1|FL072121
genomic: TCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
EST: ACCGCCTTCCTCCCAGCCCAAGTGGAT GTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
genomic: ACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcct ... ttctctgcagGTGCAGGACCGCGAACACGAGGAGGCAGGGGAGCAGCATCCACAACCACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACTGGAAAATAAGAATTCCATAGGAAAACGTGGTTTCCAAACTATTCTAAAAAATGGGCTAAAAAAAATCGACCGTCTTCCTCCCAACCCAAGTGGATgttcgtgcctatatcacagcatcagaaattcagaatcgatccgatctccgcttgcgctgagctccatcagattcaattctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA