Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211130572|gb|FL330786.1|FL330786EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|14717725|gb|BI245375.1|BI245375EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|78543767|gb|DV621265.1|DV621265EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|211275563|gb|FL307665.1|FL307665EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTCTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCGATAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|26559065|gb|CA831300.1|CA831300EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|14646223|gb|BI180412.1|BI180412EST: CTGCCTCCTGGGGAGTTTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTTTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|21760035|gb|BQ635576.1|BQ635576EST: TGCCTCCTGGGGAGTCTTCGCCGGCACCGCTCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCT
genomic: TGCCTCCTGGGGAGTCTTCGCCGGCACCGC-CGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCT
EST:
gi|211331417|gb|FL352424.1|FL352424EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|15053864|gb|BI359409.1|BI359409EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|18173060|gb|BM348448.1|BM348448EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCATTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|20301345|gb|BQ164288.1|BQ164288EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|9733818|gb|BE512570.1|BE512570EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTGCATAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|16920401|gb|BM074641.1|BM074641EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|211006699|gb|FL312884.1|FL312884EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|32870613|gb|CF010295.1|CF010295EST: GGCCTCTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: GGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|22520733|gb|BU079544.1|BU079544EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|18174519|gb|BM349907.1|BM349907EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|211210774|gb|FL332651.1|FL332651EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|22520732|gb|BU079543.1|BU079543EST: CTGCCTCCTGGGGAGTTTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTTTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|22552600|gb|BU102439.1|BU102439EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|211139795|gb|FL317674.1|FL317674EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|211535278|gb|FL465646.1|FL465646EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|211021442|gb|FL345710.1|FL345710EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|18171065|gb|BM340905.1|BM340905EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|26457616|gb|CA829199.1|CA829199EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|211530953|gb|FL309235.1|FL309235EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|5740187|gb|AI947877.1|AI947877EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|18173470|gb|BM348858.1|BM348858EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|28985893|gb|CB350868.1|CB350868EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|211043305|gb|FL320136.1|FL320136EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|18174460|gb|BM349848.1|BM349848EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|18168507|gb|BM338347.1|BM338347EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|18170102|gb|BM339942.1|BM339942EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCATTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|18166030|gb|BM335869.1|BM335869EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|18167042|gb|BM336881.1|BM336881EST: ATGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|28984735|gb|BQ539193.2|BQ539193EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST:
gi|87155615|gb|DY400404.1|DY400404EST: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
39 (downstream exon)
Score:
192CCGCTTCGTCTCCCCCCGCAGCCGTCCCCAGTCCACTGACATCGTGGCCGCTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
241CCGCTTCGTCTCCCCCCGCAGCCGTCCCCAGTCCACTGACATCGTGGCCGCTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
162CCGCTTCGTCTCCCCCCGCAGCCGTCCCCAGTCCACTGACATCGTGGCCGCTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
238CCGCTTCGTCTCCCCCCGCAGCCGTCCCCAGTCCACTGACATCGTGGCCGCTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA