Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGACCCCAACCGCGCCGCTTCCCAGAAGGCGCAGCAACAGAAGAAGGAGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgcctccccactcccccctatcgagggttcacctcacttggcctcaaccctcctccgttggcgtctccctcaccgacag

Basic information

species Zea mays
transcript GRMZM2G158136_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158136_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g50050.2 (Oryza sativa), 5'ss of exon 1
CCTCGACCCCAACCGCGCCGCTTCCCAGAAGGCGCAGCAACAGAAGAAGGAGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgcctccccactc--ccccctatcgag-ggttcacctcacttggcctcaaccctcctccgttggcgtctccctcaccgacag
 |||||||||||||||||||| ||||||||||| |  || || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| || | |  ||| | | |   |||| ||| |  | |||   ||    |  |||  | |||  |  | |   |||| |||  |   ||
GCTCGACCCCAACCGCGCCGCCTCCCAGAAGGCCCTCCAGCACAAGAAGGAGATCGCCAAGCGCCTCGGCCGCCCCCTCGTCTCCACCACCCCCTACGAGgttcgattgtttccacccccaatccccaatccatcgattcgattctagggttctcctctctcacctat-gcaatctcactctaccctag

upper sequence: GRMZM2G158136_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S29_307V6.1 (Physcomitrella patens), 5'ss of exon 1
CCTCGACCCCAACCGCGCCGCTTCCCAGAAGGCGCAGCAACAGAAGAAGGAGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgcctccccactcccccctatcgagg--gttcacctcacttggcctcaaccctcct-ccgttggcgtctccctcaccgacag--------------
 || || || ||||| ||        ||||||||||| ||||||||||||||||||| ||||| || |||||||| ||  |    ||||   | ||||||||     ||  | | | ||       |   |    || ||||    ||| |    |   |  |  |||  |  |    ||  |     |              
TCTTGATCCTAACCGAGCTCAAATTAAGAAGGCGCAGGAACAGAAGAAGGAGATCGCGAAGCGTCTTGGCCGGCCTCTAATTCAGACCAATTCTTATGAGgtaa---cgattactcgcttttaaagaggaattttgtgcaccgtctttgtctgggattttgttgtcgtgagtatgattctagcttgaggtaattgacatcgaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67030530|gb|CO459279.1|CO459279
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|149076529|gb|EE165156.2|EE165156
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|148961917|gb|EE012707.2|EE012707
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|78081860|gb|DV510272.1|DV510272
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211339704|gb|FL204262.1|FL204262
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTT
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|149105403|gb|EE290912.2|EE290912
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211339708|gb|FL204266.1|FL204266
EST:     AGATCGCCAAGCGCCTCGGCCGGCCC-TCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211339712|gb|FL204270.1|FL204270
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATT
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagG-ACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATT
EST: gi|211342099|gb|FL204278.1|FL204278
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|148949884|gb|EC895380.2|EC895380
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|50334041|gb|CO529167.1|CO529167
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|78085556|gb|DV513949.1|DV513949
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211339707|gb|FL204265.1|FL204265
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|74244276|gb|DT652190.1|DT652190
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|78121665|gb|DV540049.1|DV540049
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|91876442|gb|EB406399.1|EB406399
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211339710|gb|FL204268.1|FL204268
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|6021113|gb|AW066041.1|AW066041
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|13178205|gb|BG349463.1|BG349463
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211339709|gb|FL204267.1|FL204267
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|93283899|gb|EB676163.1|EB676163
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211342096|gb|FL204275.1|FL204275
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|91050548|gb|EB160966.1|EB160966
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|148954924|gb|EC900412.2|EC900412
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|149077190|gb|EE165854.2|EE165854
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|76923334|gb|DV169435.1|DV169435
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|78075677|gb|DV504111.1|DV504111
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|78115003|gb|DV533391.1|DV533391
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|71435533|gb|DR816583.1|DR816583
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|149089069|gb|EE178236.2|EE178236
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211339701|gb|FL204259.1|FL204259
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211342097|gb|FL204276.1|FL204276
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|149072621|gb|EE160848.2|EE160848
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|101390734|gb|EB817301.1|EB817301
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|31354032|gb|CD438389.1|CD438389
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACTTCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|149097605|gb|EE183498.2|EE183498
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|71299646|gb|DR785831.1|DR785831
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|71435645|gb|DR816695.1|DR816695
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|148941166|gb|EC886045.2|EC886045
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211339706|gb|FL204264.1|FL204264
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|148961232|gb|EE011948.2|EE011948
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|93012345|gb|EB637865.1|EB637865
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211197640|gb|FL204258.1|FL204258
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|148940585|gb|EC885389.2|EC885389
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|13178206|gb|BG349464.1|BG349464
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|148960540|gb|EE011147.2|EE011147
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|89762253|gb|DY689934.1|DY689934
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|149017489|gb|EE045689.2|EE045689
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|148944282|gb|EC889378.2|EC889378
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
EST: gi|211339703|gb|FL204261.1|FL204261
EST:     AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAG                         GACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC
genomic: AGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 43 (downstream exon)
Score: 172

CCTCGACCCCAACCGCGCCGCTTCCCAGAAGGCGCAGCAACAGAAGAAGGAGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTCGACTCCATCGGCGGCCTGGACCAGATCAAGCAGGCGCTCTACGAGCTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 189

CCTCGACCCCAACCGCGCCGCTTCCCAGAAGGCGCAGCAACAGAAGAAGGAGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTCGACTCCATCGGCGGCCTGGACCAGATCAAGCAGGCGCTCTACGAGCTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 154

CCTCGACCCCAACCGCGCCGCTTCCCAGAAGGCGCAGCAACAGAAGAAGGAGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTCGACTCCATCGGCGGCCTGGACCAGATCAAGCAGGCGCTCTACGAGCTCG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 275

CCTCGACCCCAACCGCGCCGCTTCCCAGAAGGCGCAGCAACAGAAGAAGGAGATCGCCAAGCGCCTCGGCCGGCCCCTCGTCTCCACCACGCCCTATGAGgtccgttcgc ... tcaccgacagGACGTGATTGCGTGCGACGTCATCAACCCCGACAGCATCGACGTCGAATTCGACTCCATCGGCGGCCTGGACCAGATCAAGCAGGCGCTCTACGAGCTCG