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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGCCTGAGGCGCGCGGACAAACGATGTCCTCGCCGGCGGCGGCGACGCTGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctcttgtgattcttcccgctcccccccccgagtgtaatttggtgatgtattcggctggtggaatccacgcgcagcgatacggttagtagggtt...

Basic information

species Zea mays
transcript GRMZM2G158097_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158097_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g36062.1 (Oryza sativa), 5'ss of exon 1
---CGAGCCTGAGGCGCGCGGACAAACGATGTCCTCGCCGGCGGCGGCGACGCTGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctcttgtgattcttcccgctccc-ccccccgagtgtaatttggtgatgtattcggctggtggaatccacgcgca-gcgatacg-gttagtagggtt
   |   |     |   ||        |||| |||||||||||| |||||||| ||||||||||||| ||||| | | | | | |||||||   ||||||||||||||||| |           |||| |||    |  |  |||| ||||     | | ||  | ||   | || || ||||  ||||   | | |  |||    
TCTCCCTCTCACCGGAGGCAAGGTGGGGATGGCCTCGCCGGCGGTGGCGACGCGGCACCCTTCCCCCTCCTTCTTCGGCCCGGACCCTCGC---CGCCGCCGCgtgagtgcccgctccccctcgcccgatccgattcggcccgtgtcatttcagtgttttttttgttgc--gtattcatgcgcttgcgaattgcggtgatagtac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766887|gb|DR964824.1|DR964824
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|71318422|gb|DR795977.1|DR795977
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|89761707|gb|DY689615.1|DY689615
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|148947538|gb|EC893010.2|EC893010
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|91873363|gb|EB403320.1|EB403320
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|50325272|gb|CO520398.1|CO520398
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|76922721|gb|DV169140.1|DV169140
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG