1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGCCTGGAGCTCATCGAGAAGCCGGACCGGAGCCTGGCGCTGCTGGATGAGTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcctcacttctgtgcgtttgaaattactcgggtttagtattttttaagcttaggaattgacgccatgcaattagttataaattttattagcca...
species | Zea mays |
transcript | GRMZM2G158024_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTAEST: gi|76287840|gb|DV027408.1|DV027408
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTA
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTAEST: gi|149086134|gb|EE175674.2|EE175674
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTA
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTAEST: gi|211054591|gb|FL410427.1|FL410427
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTA
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTAEST: gi|211496176|gb|FL037717.1|FL037717
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTA
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACEST: gi|211496166|gb|FL037707.1|FL037707
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCAC
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTAEST: gi|211496165|gb|FL037706.1|FL037706
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTA
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTAEST: gi|211496172|gb|FL037713.1|FL037713
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTA
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTMTTGGGGAAGCCAAATGTYGGCAAGAGCACACTTATTAEST: gi|211496174|gb|FL037715.1|FL037715
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTA
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTATTEST: gi|74240633|gb|DT648547.1|DT648547
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATT
EST: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCG GTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTA
genomic: GTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcc ... gtctcctcagGTTATGTTGCTGTATTGGGGAAGCCAAATGTTGGCAAGAGCACACTTATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCTGGAGCTCATCGAGAAGCCGGACCGGAGCCTGGCGCTGCTGGATGAGTACGAGTCGGAGGAACTGGGCACCTCTCTTTGCGCCAATCATCGTAGCGgttaggctcctcacttctgtgcgtttgaaattactcgggtttagtattttttaagcttaggaattgacgccatgcaattagttataaattttattagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA