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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGGAGCAGACGATCCTTCCCGACCTCGAAGCGTACCCCCCCTTCCAGCCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgactaacgaccccaccccggctagtgaatcgcgagtttgagggctaggttcccatccagccgtcccaacgtctcggtagatctgtgctcccagcg...

Basic information

species Zea mays
transcript GRMZM2G158021_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158021_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g43470.1 (Oryza sativa), 5'ss of exon 1
GCGAGGAGCAGACGATCCTTCCCGACCTCGAAGCGTACCCCCCCTTCC---AGCCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgactaacgaccccaccccggctagtgaatcgcgagtttgagggctaggttcccatccagccgtcccaacgtctcgg-tagatctg-tgctcccagcg-------
 ||||      | || |||||     ||||  |||  || || | |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |  |  | |   |||  | |   | ||         ||     ||| | | | ||||  |   ||| ||| ||||| || ||||| |   |       
-CGAGCCTTCTA-GAACCTTCGATTGCTCGG-GCGGGCCTCCTCCTCCGCGAGCCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgagctccc-cttctctagggccggcgtgccccgcccc-----gccgccctccga-cgatccgtagc--tgtcgcggatagatttgctgctctcgagggtagtag

upper sequence: GRMZM2G158021_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S26_115V6.1 (Physcomitrella patens), 5'ss of exon 1
GCGAGGAGCAGACGATCCTTCCCGACCTCGAAGCGTACCCCCCCTTCCAGCCGCAG---CCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgactaacgaccccaccccggctagtgaatcgcgagtttgagggctaggttccc---atccagccgtcccaacgtctcggtagatctgtgctcccagcg
   |||| |    ||  |||     | ||  | |   | |  | ||      | |    ||||| |||||||||||||||| |||||||| ||||| || ||||| |     |   ||| |  | || ||   |  | ||    |  |  ||    |  |    ||  |     |    ||     |  |||  |||         
---AGGATCCAGAGAGGCTTGTTCGCTTCACATCCAGCTCTTCTTTTTGTGGGTAATCACCATGTCGACCGTCATGCAGAAAATCAAGGATATCGAAGATGAGgttagttgcactcaccgcgtctcgcctcaggggttgcattctctactgcccattatcaggaattgatgatgcttttcgaacaagaggatgcgtgggtttg---

upper sequence: GRMZM2G158021_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ09453 (Selaginella moellendorffii), 5'ss of exon 1
GCGAGGAGCAGACGATCCTTCCCGACCTCGAAGCGTACCCCCCCTTCCAGCCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgactaacgaccccaccccggctagtgaatcgcgagtttgagggctaggttcccatccagccgtcccaacgtctcggtagatctgtgctcccagcg
                                                          ||||||||||| ||||||||||||||||||||||| || |||||      |  || |  ||    ||       ||||   ||||   |  |  ||                                              
----------------------------------------------------------ATGGCGACCGTGATGCAGAAGATCAAGGACATCGAAGATGAGgtgcgctttctcggctgcatt--ggtcgcccgatcgatggtttcttgtttgcgtag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211270941|gb|FL142975.1|FL142975
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTACTTCT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGT-CTTCT
EST: gi|211268510|gb|FL142969.1|FL142969
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268505|gb|FL142964.1|FL142964
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268500|gb|FL142959.1|FL142959
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|71769273|gb|DR967210.1|DR967210
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268504|gb|FL142963.1|FL142963
EST:     TGCGGCCATGGCGACCGTCWATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CGCAGCCATGGCGACCGTC-ATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|32919863|gb|CF024675.1|CF024675
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|32848352|gb|CD988033.1|CD988033
EST:     CGCAGCCATGGCGTCCGTCATGCAGAAGATC-AGGTACATCGAGGTCGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CGCAGCCATGGCGACCGTCATGCAGAAGATCAAGG-ACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268509|gb|FL142968.1|FL142968
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCAAGGACGAG                         ATGGCAAGGACACAGAAGAATAARGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|67034867|gb|CO463400.1|CO463400
EST:     CCGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|74240038|gb|DT647952.1|DT647952
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211270940|gb|FL142974.1|FL142974
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|71418217|gb|DR804368.1|DR804368
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268506|gb|FL142965.1|FL142965
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|76937221|gb|DV175090.1|DV175090
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268513|gb|FL142972.1|FL142972
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|71436936|gb|DR817986.1|DR817986
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211270942|gb|FL142976.1|FL142976
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268499|gb|FL142958.1|FL142958
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAARGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|30306602|gb|CD001275.1|CD001275
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268501|gb|FL142960.1|FL142960
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|67042509|gb|CO468764.1|CO468764
EST:     CCGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|33094247|gb|CF054241.1|CF054241
EST:     CGACAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CG-CAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211270943|gb|FL142977.1|FL142977
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|22520897|gb|BU079708.1|BU079708
EST:     CGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCT
genomic: CGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGA-GGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCT
EST: gi|22542275|gb|BU092713.1|BU092713
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268512|gb|FL142971.1|FL142971
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|87155566|gb|DY400355.1|DY400355
EST:     CCGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|71312952|gb|DR792998.1|DR792998
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|74233974|gb|DT641888.1|DT641888
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|60343127|gb|DN210100.1|DN210100
EST:     GACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: GACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|6527040|gb|AW216258.1|AW216258
EST:     GGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: GGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|211268507|gb|FL142966.1|FL142966
EST:     CTGCGGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
EST: gi|32836350|gb|CD976028.1|CD976028
EST:     CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAG                         ATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT
genomic: CCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 326

GCGAGGAGCAGACGATCCTTCCCGACCTCGAAGCGTACCCCCCCTTCCAGCCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 210

GCGAGGAGCAGACGATCCTTCCCGACCTCGAAGCGTACCCCCCCTTCCAGCCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTTAAG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 119

GCGAGGAGCAGACGATCCTTCCCGACCTCGAAGCGTACCCCCCCTTCCAGCCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 345

GCGAGGAGCAGACGATCCTTCCCGACCTCGAAGCGTACCCCCCCTTCCAGCCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgacta ... gactatgcagATGGCAAGGACACAGAAGAATAAAGCCACTGCTCACCATCTTGGTCTTCTTAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGAGGAGCAGACGATCCTTCCCGACCTCGAAGCGTACCCCCCCTTCCAGCCGCAGCCATGGCGACCGTCATGCAGAAGATCAAGGACATCGAGGACGAGgtaacgactaacgaccccaccccggctagtgaatcgcgagtttgagggctaggttcccatccagccgtcccaacgtctcggtagatctgtgctcccagcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtccc