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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCACAGGCTGCTCAGCAAGGGCCGCGGCCTCACCGCCGAGGGGTTCCTCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGGgtgagtttttctctccctctcttttaatttttctctgttcgttctaggaataatcctataaaaacatacatccacatatactgtgttgtgatccaattct...

Basic information

species Zea mays
transcript GRMZM2G157760_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76927858|gb|DV171398.1|DV171398
EST:     TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGG                         GTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC
genomic: TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGGgtgagttttt ... agaagtgcagGTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC
EST: gi|149026597|gb|EE046022.2|EE046022
EST:     TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGG                         GTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC
genomic: TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGGgtgagttttt ... agaagtgcagGTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC
EST: gi|211517579|gb|FL355405.1|FL355405
EST:     TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGG                         GTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC
genomic: TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGGgtgagttttt ... agaagtgcagGTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC
EST: gi|148945039|gb|EC890223.2|EC890223
EST:     TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGG                         GTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC
genomic: TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGGgtgagttttt ... agaagtgcagGTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC
EST: gi|211541606|gb|FL367255.1|FL367255
EST:     TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGG                         GTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC
genomic: TCCGGTGGCTCTTCAGCGACGCCAACGCCGCCCTCGATCCGCGCCGAGGGgtgagttttt ... agaagtgcagGTATACCAGGACATGGGCTTGCCGCTGTCGCACTACTTCATCTACACGGGC