1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCCAGAGTGATCGGGGACGGGAGTGCCGTGCAGCAGGCGCGGGAGGTGGCCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAGgtacggtgctgccattcgattcggtttcttctggcatgctggttccggcattgagaagtcaaattttgaagccgcatttttcttgtgatgattgagccat...
species | Zea mays |
transcript | GRMZM2G156608_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAG GTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTCEST: gi|148999400|gb|EE036347.2|EE036347
genomic: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAGgtacggtgct ... tggtattcagGTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTC
EST: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAG GTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTCEST: gi|76921262|gb|DV168515.1|DV168515
genomic: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAGgtacggtgct ... tggtattcagGTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTC
EST: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAG GTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTCEST: gi|149080641|gb|EE169692.2|EE169692
genomic: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAGgtacggtgct ... tggtattcagGTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTC
EST: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAG GTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTCEST: gi|71770801|gb|DR968738.1|DR968738
genomic: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAGgtacggtgct ... tggtattcagGTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTC
EST: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAG GTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTCEST: gi|71448985|gb|DR830035.1|DR830035
genomic: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAGgtacggtgct ... tggtattcagGTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTC
EST: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAG GTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTC
genomic: CCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAGgtacggtgct ... tggtattcagGTCTCGTCTATTCGTGCAAGCAAGTCTGATGATAAGAGGCTGTACATATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCAGAGTGATCGGGGACGGGAGTGCCGTGCAGCAGGCGCGGGAGGTGGCCGCGGGGGCAGGAAAGCTGTGGAAGCCGTTTGGCGTGATACACCTCAAGgtacggtgctgccattcgattcggtttcttctggcatgctggttccggcattgagaagtcaaattttgaagccgcatttttcttgtgatgattgagccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG