1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTCGCCGCCGGTTGGCCACCGTGGCTCGTCGCAGTCGCCGGGGAGGCCCTCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaaacctctcccctgaaatctggtcgtggtacggaagtaccgtactgattcgccattcccttgttgtgttggctttgtccggcgattcactcttag
species | Zea mays |
transcript | GRMZM2G156251_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCTEST: gi|78108483|gb|DV526901.1|DV526901
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCTEST: gi|78114940|gb|DV533328.1|DV533328
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCTEST: gi|78104873|gb|DV523291.1|DV523291
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCTEST: gi|211389336|gb|FL016871.1|FL016871
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCTEST: gi|149108874|gb|EE293017.2|EE293017
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
EST: TCCGCGGTTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAACTTAATAAG ATATGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCTEST: gi|148967144|gb|EE018323.2|EE018323
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTEST: gi|211386702|gb|FL016858.1|FL016858
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGT
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCTEST: gi|149097793|gb|EE183717.2|EE183717
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCTEST: gi|211389337|gb|FL016872.1|FL016872
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCTEST: gi|148944130|gb|EC889218.2|EC889218
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
EST: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAG ATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
genomic: TCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaa ... tcactcttagATAGGATCGGGCACGTACAGCAACGTGTACCGGGCGAGGGACACCGTCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGCCGCCGGTTGGCCACCGTGGCTCGTCGCAGTCGCCGGGGAGGCCCTCCGCGGCTGGGCGCCGCGCCGCGCCGACACGTTCGAGAAGCTTAATAAGgtaggcgaaaacctctcccctgaaatctggtcgtggtacggaagtaccgtactgattcgccattcccttgttgtgttggctttgtccggcgattcactcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC