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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGCAGGGCGCTGACGGAATGGAAGGTTCGGCGTCGAAAACTGATAGGAGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACGgtaatgtcttgcttacttgcgtcacgaattacggaattaggttaggggatatacactgaaataccaacgtgattgctggaacttgcaacagaggattagt...

Basic information

species Zea mays
transcript GRMZM2G156158_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211328610|gb|FK972861.1|FK972861
EST:     AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACG                         GTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC
genomic: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACGgtaatgtctt ... catgtcacagGTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC
EST: gi|211328602|gb|FK972853.1|FK972853
EST:     AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACG                         GTTTGATCAATGTGCCCATTTCTCCACTATCACTGAAAGCCATCAAAGATG
genomic: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACGgtaatgtctt ... catgtcacagGTTTGATCAATGTGCC-ATTTCTCCACTGTCACTGAAAGCCATCAAAGATG
EST: gi|211330760|gb|FK972863.1|FK972863
EST:     AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACG                         GTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC
genomic: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACGgtaatgtctt ... catgtcacagGTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC
EST: gi|211328605|gb|FK972856.1|FK972856
EST:     AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACG                         GTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC
genomic: AGCGTTCACGAGGCAGTTGGCGTCGATGGCACGTACCTCACCGAGACACGgtaatgtctt ... catgtcacagGTTTGATCAATGTGCCATTTCTCCACTGTCACTGAAAGCCATCAAAGATGC