Sequence
atgc intronic sequence ATGC exonic sequenceGCTGCTGGAGAGGCTCAAGGACTACGGCCAGGAGGGTGCCTTCGCCTTCTGGGACGAGCTCGCGCCCGAGGAGCGCGACCGCCTCATCCGGGACATTGAGgtgagcagccacataaatttgggctgcctaaaggtttcttctttctgtttctcttttgcgtggtaactgttaagagacgtgcagatattttggtgtaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G155729_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g10600.1 (Oryza sativa), 5'ss of exon 1
GCTGCTGGAGAGGCTCAAGGACTACGGCCAGGAGGGTGCCTTCGCCTTCTGGGACGAGCTCGCGCCCGAGGAGCGCGACCGCCTCATCCGGGACATTGAGgtgagcagccacataaatttgggctgcctaaaggtttcttctttctgtttc--tcttttgcgtggtaactgttaagagacgtgcagatattttggtgtaaaa
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GCTGGTCGAGAGGCTCAAGGACTACGGCCAGGAGGGCGCCTTCGCGCTCTGGGACGAGCTCGCCCCCGAGGAGCGCGACTTCCTCGTCCGGGACATCGAGgtcgagatcccttgctcctgctgctgctgctgctgcttctcctcgcgttttgatgttttcttttttagagttttagattcggttgctcagttgagacttc--
upper sequence: GRMZM2G155729_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 1
GCTGCTGGAGAGGCTCAAGGACTACGGCCAGGAGGGTGCCTTCGCCTTCTGGGACGAGCTCGCGCCCGAGGAGCGCGACCGCCTCATCCGGGACATTGAGgtgagcagccacataaatttgggctgcctaaaggtttcttctttctgtttctcttttgcgtggt--aactgttaagagacgtgcagatattttggtgtaaaa-
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TCTTCTGGAGAGGCTCAAGGATTACGGCCAGGAGTATACTTTTGCCCTTTGGGACGAGCTTTCGGCAGAGGAGCGAGACCTTCTCGTCAAGGACATCGAGgt---cgttctctttgtctttcatttctccgttcggtggccgagaaaactagattttgaataatttgatcagtttgtggtgttagggattcatgattttcatt
upper sequence: GRMZM2G155729_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv00s2207g00010.t01 (Vitis vinifera), 5'ss of exon 1
GCTGCTGGAGAGGCTCAAGGACTACGGCCAGGAGGGTGCCTTCGCCTTCTGGGACGAGCTCGCGCCCGAGGAGCGCGACCGCCTCATCCGGGACATTGAGgtgagcagccacataaatttgggctgcctaaaggtttcttctttctgtttctcttttgcgtggt--aactgttaagagacgtgcagatattttggtgtaaaa-
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TCTTCTGGAGAGGCTCAAGGATTACGGCCAGGAGTATACTTTTGCCCTTTGGGACGAGCTTTCGGCAGAGGAGCGAGACCTTCTCGTCAAGGACATCGAGgt---cgttctctttgtctttcatttctccgttcggtggccgagaaaactagattttgaataatttgatcagtttgtggtgttagggattcatgatttacattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211407697|gb|FL252162.1|FL252162EST: GGGACGAGCTCGCGCCCGAGGAGCGCGACCGCCTCATCCGGGACATTGAG AGCCTAGATCTTCCTAGAATTGATCGGATTGTCCGATGCTCGCTTAGATCA
genomic: GGGACGAGCTCGCGCCCGAGGAGCGCGACCGCCTCATCCGGGACATTGAGgtgagcagcc ... caaatttcagAGCCTAGATCTTCCTAGAATTGATCGGATTGTCCGATGCTCGCTTAGATCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGCTGGAGAGGCTCAAGGACTACGGCCAGGAGGGTGCCTTCGCCTTCTGGGACGAGCTCGCGCCCGAGGAGCGCGACCGCCTCATCCGGGACATTGAGgtgagcagccacataaatttgggctgcctaaaggtttcttctttctgtttctcttttgcgtggtaactgttaagagacgtgcagatattttggtgtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG