1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGCACCGCTAAAACCTAGCAGAGGCTCGTGCCGCCACCGCCAGCCGCAACAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatccccaatcgtttaagctccttccttcctgttatctggggatggcactacttcctgtttgtagtattgattcgttttcctgtaccattttgtgcct...
species | Zea mays |
transcript | GRMZM2G155437_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211011963|gb|FL302299.1|FL302299
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211520197|gb|FL010166.1|FL010166
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211520200|gb|FL010169.1|FL010169
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|32907095|gb|CF011908.1|CF011908
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211011965|gb|FL302301.1|FL302301
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|15100390|gb|BI396181.1|BI396181
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CCCAAGTCCAAGCGCAACCGCCCAG TGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211009195|gb|FL302296.1|FL302296
genomic: CCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211011962|gb|FL302298.1|FL302298
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAG TGACCTTATCGAAGGACCAAGAAGAAGCCRGGTTTGGAGCGCAAGGGCAAAEST: gi|211520196|gb|FL010165.1|FL010165
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAA-GACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAA
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGC-ACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211009194|gb|FL302295.1|FL302295
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211520199|gb|FL010168.1|FL010168
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211520198|gb|FL010167.1|FL010167
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAGEST: gi|211011966|gb|FL302302.1|FL302302
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
EST: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGTGCAACCGCCCAG TGACTTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
genomic: CAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatcccca ... acgaacgcagTGACCTTATCGAAGACCAAGAAGAAGCCAGGTTTGGAGCGCAAGGGCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCACCGCTAAAACCTAGCAGAGGCTCGTGCCGCCACCGCCAGCCGCAACAAGGAAGGAACCAGGAACACAATGCCCAAGTCCAAGCGCAACCGCCCAGgtgatccccaatcgtttaagctccttccttcctgttatctggggatggcactacttcctgtttgtagtattgattcgttttcctgtaccattttgtgcct
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttcc