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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCCATCCTCATCCCCATCCGCCACCCACCCCGCGCCCCTCCTTCTCACTCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcgacgtaaaggcggccgcttgctttgccaccgccggcgctcgtcatctccttacttattcatccctgcggccctgctacacatcggtgccgtgccgcgcttgattccgtcctgtcctgtgcttgaattgtag

Basic information

species Zea mays
transcript GRMZM2G155348_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211260476|gb|FL344585.1|FL344585
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAA                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|149112970|gb|EE295755.2|EE295755
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|78089704|gb|DV518078.1|DV518078
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211320724|gb|FL358335.1|FL358335
EST:     TCCAGTGCTGGCTGCCGGCCA-CTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211258052|gb|FL344582.1|FL344582
EST:     AGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: AGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211031026|gb|FL333346.1|FL333346
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|149109828|gb|EE293622.2|EE293622
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211481224|gb|FL364143.1|FL364143
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|88755787|gb|DY539928.1|DY539928
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211163530|gb|FL327749.1|FL327749
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|78107373|gb|DV525791.1|DV525791
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|148991617|gb|EE033151.2|EE033151
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|93014677|gb|EB640197.1|EB640197
EST:     GGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: GGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|149085937|gb|EE175465.2|EE175465
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|149081007|gb|EE170107.2|EE170107
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211052990|gb|FL348451.1|FL348451
EST:     CAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: CAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211210782|gb|FL332659.1|FL332659
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211140195|gb|FL362162.1|FL362162
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211528534|gb|FL329333.1|FL329333
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|211325062|gb|FL357896.1|FL357896
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|148957044|gb|EC903004.2|EC903004
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|33467649|gb|CF244698.1|CF244698
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
EST: gi|76014158|gb|DT941328.1|DT941328
EST:     TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAG                         GTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG
genomic: TCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcg ... tgaattgtagGTGGCGGTGGATGACCAGCTCTCGGAGTTTTCTGAGGCGAGGATCGGAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCCATCCTCATCCCCATCCGCCACCCACCCCGCGCCCCTCCTTCTCACTCCAGTGCTGGCTGCCGGCCAGCTCCGCCCCCGGGGTCCTTGAGCTGGAGgtgggtggcgacgtaaaggcggccgcttgctttgccaccgccggcgctcgtcatctccttacttattcatccctgcggccctgctacacatcggtgccgtgccgcgcttgattccgtcctgtcctgtgcttgaattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGCCCCCG