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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGCCGGCTGCGTCGGGGAGCGCGGTGGCTGTGGTGTCGGCTGCGGCCGCCGCCCCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGATCGgtgggtttctcccttcggatgggcgaaaggaggctccattagggcttgaaatgcctctcatattcggttcttgttacatgagcttcatttggctgctgct...

Basic information

species Zea mays
transcript GRMZM2G155337_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155337_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g35960.1 (Oryza sativa), 5'ss of exon 1
CCGCGCCGGCTGCGTCGGGGAGCGCGGTGGCTGTGGTGTCGGCTGCGGCCGCCGCC-CCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGATCGgtgggtttctcc------cttcggatgggcgaaaggaggctccattagggcttgaaatgcctctcatattcggttcttgttacatgag-cttcatttggctgctgct
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GCTCCGTGGCCATGGTGTCCGCTTCGGCGCCCGCCGCGTCGTC-GTCGCCGTCGCCGTCGCCAGCGCCCGCCCCCGCGCCGTCCTCGCCGCACTCGGATCGgtgggttttctccctctccttcggattggtgaaaaggagg---agtaaaaat---gactccttttttagtcctttccttttgggggcgtcttgatctgcttcccgt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88753704|gb|DY537845.1|DY537845
EST:     CGCCCCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGATCG                         GGGTGGTATTAAATCTCCATGGTCCCGAAGGAAAAGAAAACGAGCACTTTC
genomic: CGCCCCGTCTTCTTCCTCGCCGGCGTCGTCCTCGCCGCACTCGGATCGgtgggtttct ... tatgttacagGGGTGGTATTAAATCTCCATGGTCCCGAAGGAAAAGAAAACGAGCACTTTC