1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTCCCTCCTCTGTCCTCCGTACCACTCGTCTTCGTCTAGCCGCCGACCGCCACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacgccatctctgccctcctccttacctcctgatttaagtactcttcatgttcaccggtgcccggcaactgtttcatcctgacgcgtgttgtttccctttgcgcgcag
species | Zea mays |
transcript | GRMZM2G155021_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|76287240|gb|DV026808.1|DV026808
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|211331694|gb|FL020929.1|FL020929
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|22521527|gb|BU080338.1|BU080338
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|71432321|gb|DR813371.1|DR813371
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|211331700|gb|FL020935.1|FL020935
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|33102963|gb|CF062923.1|CF062923
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|71425209|gb|DR806571.1|DR806571
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|211331696|gb|FL020931.1|FL020931
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|67041269|gb|CO467524.1|CO467524
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|21987817|gb|BQ779345.1|BQ779345
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|20512879|gb|BQ280071.1|BQ280071
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: ACCACCATGGCGCGCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|211331704|gb|FL020939.1|FL020939
genomic: ACCACCATGGCAC-CCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|33102108|gb|CF062068.1|CF062068
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|101397701|gb|EB820731.1|EB820731
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|88752281|gb|DY536422.1|DY536422
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|22472298|gb|BU036778.1|BU036778
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGG-CTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|74244464|gb|DT652378.1|DT652378
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|211331699|gb|FL020934.1|FL020934
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|211331695|gb|FL020930.1|FL020930
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|37423435|gb|CF649445.1|CF649445
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|91874353|gb|EB404310.1|EB404310
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|67020552|gb|CO449301.1|CO449301
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|78112263|gb|DV530657.1|DV530657
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCTEST: gi|211331701|gb|FL020936.1|FL020936
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|211331703|gb|FL020938.1|FL020938
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCTEST: gi|37425454|gb|CF650468.1|CF650468
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTGACCACCTEST: gi|32907826|gb|CF012639.1|CF012639
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
EST: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAG ATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTGCCTCACCACCT
genomic: CACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacg ... ttgcgcgcagATCTGCTGTACAAGGACTACAACACGCACCAGAAGTTCTCCCTCACCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCCTCCTCTGTCCTCCGTACCACTCGTCTTCGTCTAGCCGCCGACCGCCACCACCATGGCACCCGGCCTCTACACCGACATCGGCAAGAAGACCAGAGgtcttgcacgccatctctgccctcctccttacctcctgatttaagtactcttcatgttcaccggtgcccggcaactgtttcatcctgacgcgtgttgtttccctttgcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG