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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCTGCTGGTGCCTGCTCTTGTCCTCCGGCACAGCGCAGGGTGTCGGGGTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaactgagaattgattactgattgtcgttgcatcacattttgtttgatgaatgcctgtggctagtttctagtgctggcattgcaatactcacaca...

Basic information

species Zea mays
transcript GRMZM2G154890_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91874746|gb|EB404703.1|EB404703
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|60337602|gb|DN204575.1|DN204575
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAAT-CCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|78112616|gb|DV531010.1|DV531010
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|71318964|gb|DR796231.1|DR796231
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|78082479|gb|DV510891.1|DV510891
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|211102305|gb|FL158952.1|FL158952
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAAT-CCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|89248462|gb|DY620248.1|DY620248
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|91875540|gb|EB405497.1|EB405497
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|50335743|gb|CO530869.1|CO530869
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|76016499|gb|DT943669.1|DT943669
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|211104769|gb|FL158955.1|FL158955
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCC-TCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|50339681|gb|CO534807.1|CO534807
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGA---A                         -TTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|34391377|gb|CF384605.1|CF384605
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|78114767|gb|DV533155.1|DV533155
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|74239326|gb|DT647240.1|DT647240
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|89755818|gb|DY686096.1|DY686096
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|86469538|gb|DY235908.1|DY235908
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGAGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCGTGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|101390933|gb|EB817402.1|EB817402
EST:     GTCGCTCCCAGCTGGCCATCCTCTCCGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAAT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAAT
EST: gi|76286526|gb|DV026094.1|DV026094
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT
EST: gi|211102307|gb|FL158954.1|FL158954
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCC-TCCCCTCTCACGCTCCACCACTGATCATGGGGGC
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGG-C
EST: gi|211102303|gb|FL158950.1|FL158950
EST:     GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCA                         ATTTGGTGAATCCCCC-TCCCCTCTCACGCTCCACCACTGATCATGGGGCT
genomic: GTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaact ... cttttatcagATTTGGTGAATCCCCCCTCCCCTCTCACGCTCCACCACTGATCATGGGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGCTGCTGGTGCCTGCTCTTGTCCTCCGGCACAGCGCAGGGTGTCGGGGTCGCTCCCAGCTGGCCATCCTCTCGGCCCCCTTGTTGCACAGCGAGTCAgtgagtaactgagaattgattactgattgtcgttgcatcacattttgtttgatgaatgcctgtggctagtttctagtgctggcattgcaatactcacaca

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