Sequence
atgc intronic sequence ATGC exonic sequenceGGGTTTATGGCTTTGGTCAATCCATGGCGTGCGGTGGCGAGGTCGCGCTGTCGCTTCTTCTTTAATGCGCGCTGATCCCCATGGACGCCGAGTCCCCACGgtaaatcccacaaaaaggcgggtccctttgcccatttcgcctgcctccttttctctgctatggtctcttgttctccgttccttgttttcatattggcctgaggagggggggaatgcctttgttggggttccctccgggagctgtggttgatggtcctgaggtttggcgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g17540.3 (Oryza sativa), 5'ss of exon 1
GGGTTT---ATGGCTTTGGTCAATCCATGGCGTGCGGTGGCGAGGTCGCGCTGTCGCTTCTTCTTTAATGCGCGCTGATCCCCATGGACGCCGAGTCCCCACGgtaaatcccacaaaaaggcgggtccctttgcccatttc-gcctgcctccttttctctgctatggtctcttgttctc--------cgttccttgttt---tcatattggcctgagga-----gggggggaatgcctttgttggggttccctccgggagctgtggttgatggtcctgaggtttggcgcag
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GGGTTTAGTATGGCTTTGGTCAATCCATGGCGTGCGGTGCCGAGGTCGCCCTGTCGCTTCTTCTTTAATGCGCGTTGATCCCCATGGACGGCGAGTGCC---Ggtaaaacccaataaaaggcgcctccttttcctttcctccgcctccctctcgctagcatttattgtcttgtattgttgcatacgtcgttgttcgtttaggttggatttgggttaggatttgtgtggcataatgcggtggttggaattgccttcgggagttgtggttgatggtggtgaggtttggcgcag
upper sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g17540.3 (Oryza sativa), 5'ss of exon 1
GGGTTT---ATGGCTTTGGTCAATCCATGGCGTGCGGTGGCGAGGTCGCGCTGTCGCTTCTTCTTTAATGCGCGCTGATCCCCATGGACGCCGAGTCCCCACGgtaaatcccacaaaaaggcgggtccctttgcccatttc-gcctgcctccttttctctgctatggtctcttgttctc--------cgttccttgttt---tcatattggcctgagga-----gggggggaatgcctttgttggggttccctccgggagctgtggttgatggtcctgaggtttggcgcag
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GGGTTTAGTATGGCTTTGGTCAATCCATGGCGTGCGGTGCCGAGGTCGCCCTGTCGCTTCTTCTTTAATGCGCGTTGATCCCCATGGACGGCGAGTGCC---GgtaaaacccaataaaaggcgcctccttttcctttcctccgcctccctctcgctagcatttattgtcttgtattgttgcatacgtcgttgttcgtttaggttggatttgggttaggatttgtgtggcataatgcggtggttggaattgccttcgggagttgtggttgatggtggtgaggtttggcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32869190|gb|CF008872.1|CF008872EST: TCGCTTCTTCTTTAATGCGCGCTGATCCCCATGGACGCCGAGTCCCCACG GGACGCTTATGGTTTCGCGGTGCGGCCACAGCATCTGCAGCGTTTCCGCGA
genomic: TCGCTTCTTCTTTAATGCGCGCTGATCCCCATGGACGCCGAGTCCCCACGgtaaatccca ... tttggcgcagGGACGCTTATGGTTTCGCGGTGCGGCCACAGCATCTGCAGCGTTTCCGCGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTTTATGGCTTTGGTCAATCCATGGCGTGCGGTGGCGAGGTCGCGCTGTCGCTTCTTCTTTAATGCGCGCTGATCCCCATGGACGCCGAGTCCCCACGgtaaatcccacaaaaaggcgggtccctttgcccatttcgcctgcctccttttctctgctatggtctcttgttctccgttccttgttttcatattggcctgaggagggggggaatgcctttgttggggttccctccgggagctgtggttgatggtcctgaggtttggcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA