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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCTCTCTCTCTCTCTCTCTCCCCTCCCTGTCTCCCTCCCCCTCTCGGAGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAGgtatcccaccccttctcttcccttcttcctgctatgcgaattaggcggaccggccaatagggcgaccacccgcccgcctgagaggccgtgcggaggttga...

Basic information

species Zea mays
transcript GRMZM2G154221_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101393686|gb|EB818775.1|EB818775
EST:     AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAG                         GAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT
genomic: AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAGgtatcccacc ... ttcttgtcagGAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT
EST: gi|33467119|gb|CF244168.1|CF244168
EST:     AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAG                         GAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT
genomic: AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAGgtatcccacc ... ttcttgtcagGAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT
EST: gi|50327503|gb|CO522629.1|CO522629
EST:     AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAG                         GAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT
genomic: AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAGgtatcccacc ... ttcttgtcagGAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT
EST: gi|78118653|gb|DV537037.1|DV537037
EST:     AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAG                         GAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT
genomic: AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAGgtatcccacc ... ttcttgtcagGAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT
EST: gi|78084282|gb|DV512675.1|DV512675
EST:     AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAG                         GAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT
genomic: AGTCTCGGTCGTGGCGACGACGACTGGGCAGGCCGACGAGCACCCACCAGgtatcccacc ... ttcttgtcagGAAAAGTATTGCTCCTAGCCTCCTACAGCTAGTTCTTTTTATGATTAAGCT