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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGAGCGACTGTGTCGAGCAGGAGAGAGCGCGATGGGGAAGATGCGGCAGCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagggtctttacctctaaactcgatcgccttgtcagagccgtccgcccctcacagccttgctccttcccgtttgccttgacgtgctctccttttgaaaccattgcttgtgatttgtatgcag

Basic information

species Zea mays
transcript GRMZM2G153991_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211034324|gb|FL376241.1|FL376241
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211117648|gb|FL049547.1|FL049547
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|91054743|gb|EB165161.1|EB165161
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|24773940|gb|CA409194.1|CA409194
EST:     GCTGATCTGCCTCG-GGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|149005134|gb|EE039667.2|EE039667
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|22819346|gb|BU499436.1|BU499436
EST:     CTGATCTGCCTCGATGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: CTGATCTGCCTCG-TGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|148931677|gb|EC874859.2|EC874859
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211116860|gb|FL049534.1|FL049534
EST:     GCTGATCTGCCTCGKGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCRRGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211150009|gb|FL374643.1|FL374643
EST:     S-TGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|30031800|gb|CB833651.1|CB833651
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211240981|gb|FL293639.1|FL293639
EST:     GTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211117646|gb|FL049545.1|FL049545
EST:     SSTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211205079|gb|FL419130.1|FL419130
EST:     TCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: TCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211117644|gb|FL049543.1|FL049543
EST:     S-TGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211117643|gb|FL049542.1|FL049542
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211116864|gb|FL049538.1|FL049538
EST:     -STGATCTGCCTCGTGGCCGCCGTCGCCGCCGC-GCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211117642|gb|FL049541.1|FL049541
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211082659|gb|FL412223.1|FL412223
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211117649|gb|FL049548.1|FL049548
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|116823847|gb|EC867424.1|EC867424
EST:     GCGG-CATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211116857|gb|FL049531.1|FL049531
EST:     TGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: TGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211117645|gb|FL049544.1|FL049544
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211116862|gb|FL049536.1|FL049536
EST:     SSTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|22542120|gb|BU092558.1|BU092558
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211079084|gb|FL380731.1|FL380731
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|61117989|gb|DN558950.1|DN558950
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|32865924|gb|CF005606.1|CF005606
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211453697|gb|FL370753.1|FL370753
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|149090104|gb|EE179400.2|EE179400
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211389797|gb|FL380127.1|FL380127
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|21987364|gb|BQ778892.1|BQ778892
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211122276|gb|FL373651.1|FL373651
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|149071444|gb|EE159839.2|EE159839
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|149005133|gb|EE039666.2|EE039666
EST:     CCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: CCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|60399310|gb|DN232124.1|DN232124
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|211059587|gb|FL481931.1|FL481931
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|149071445|gb|EE159840.2|EE159840
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
EST: gi|24773190|gb|CA408444.1|CA408444
EST:     GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAG                         CGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG
genomic: GCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 123

AGCGAGCGACTGTGTCGAGCAGGAGAGAGCGCGATGGGGAAGATGCGGCAGCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 81

AGCGAGCGACTGTGTCGAGCAGGAGAGAGCGCGATGGGGAAGATGCGGCAGCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 82

AGCGAGCGACTGTGTCGAGCAGGAGAGAGCGCGATGGGGAAGATGCGGCAGCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 149

AGCGAGCGACTGTGTCGAGCAGGAGAGAGCGCGATGGGGAAGATGCGGCAGCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagg ... ttgtatgcagCGTCGGCCAAGAAGTCCGGCGACGTCACCGAGCTTCAGATCGGCGTCAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCGAGCGACTGTGTCGAGCAGGAGAGAGCGCGATGGGGAAGATGCGGCAGCTGATCTGCCTCGTGGCCGCCGTCGCCGCCGCGGCCATCCTCCTGACAGgtgacgcagggtctttacctctaaactcgatcgccttgtcagagccgtccgcccctcacagccttgctccttcccgtttgccttgacgtgctctccttttgaaaccattgcttgtgatttgtatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT