1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCGGCCGCGGTGCAGAAGCAGAAGTCGCTGCTGCAGAAGGCGGACGCCGACGTCTCCAGCCTCGTCGACAATTTCTCCTCCCTCATCAACATCGCCCGAgtatgtccgtgcgcctccgttcaccctcgaatctggcagcctgaagcactccgcactaaccctagctcggaatgccatggttag
species | Zea mays |
transcript | GRMZM2G153766_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGTCTCCAGCCTCGTCGACAATTTCTCCTCCCTCATCAACATCGCCCGA GTTAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATGEST: gi|18163136|gb|BM332975.1|BM332975
genomic: ACGTCTCCAGCCTCGTCGACAATTTCTCCTCCCTCATCAACATCGCCCGAgtatgtccgt ... ccatggttagGTCAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATG
EST: TCAACATCGCCCGA GTCAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATGEST: gi|211096938|gb|FL476433.1|FL476433
genomic: TCAACATCGCCCGAgtatgtccgt ... ccatggttagGTCAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATG
EST: ACGTCTCCAGCCTCGTCGACAATTTCTCCTCCCTCATCAACATCGCCCGA GTCAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATGEST: gi|60353752|gb|DN220725.1|DN220725
genomic: ACGTCTCCAGCCTCGTCGACAATTTCTCCTCCCTCATCAACATCGCCCGAgtatgtccgt ... ccatggttagGTCAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATG
EST: CCTCCCTCATCAACATCGCCCGA GTCAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATG
genomic: CCTCCCTCATCAACATCGCCCGAgtatgtccgt ... ccatggttagGTCAACGATCCGCCAGTGCGCAACTCGCAGGAGGCCTTCCAGATGGAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGGCCGCGGTGCAGAAGCAGAAGTCGCTGCTGCAGAAGGCGGACGCCGACGTCTCCAGCCTCGTCGACAATTTCTCCTCCCTCATCAACATCGCCCGAgtatgtccgtgcgcctccgttcaccctcgaatctggcagcctgaagcactccgcactaaccctagctcggaatgccatggttag
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