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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGCACCCTTACGCTGCAATGGAAATGTTGACTGCATCAATCCAGCGCATTGTATATTCTCCAATGAGCAATCACCTGATTTTCAGAAATGCTATCAGgtcagtttggaggctaggacccttctttactgttaccacttcttaattcagagcttctggttcgttgtttctctaataaatgctgctatagttgatcatg...

Basic information

species Zea mays
transcript GRMZM2G153704_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6227098|gb|AW155802.1|AW155802
EST:     ATTGTATATTCTCCAATGAGCAATCACCTGATTTTCAGAAATGCTATCAG                         GGTGAACAAGATGTTGATTCTTCTGCTACATCGCTAAACAATGAGCCCAAT
genomic: ATTGTATATTCTCCAATGAGCAATCACCTGATTTTCAGAAATGCTATCAGgtcagtttgg ... ctatgtacagGGTGAACAAGATGTTGATTCTTCTGCTACATCGCTAAACAATGAGCCCAAT
EST: gi|32932491|gb|CF037303.1|CF037303
EST:     ATTGTATATTCTCCAATGAGCAATCACCTGATTTTCAGAAATGCTATCAG                         GGTGAACAAGATGTTGATTCTTCTGCTACATCGCTAAACAATGAGCCCAAT
genomic: ATTGTATATTCTCCAATGAGCAATCACCTGATTTTCAGAAATGCTATCAGgtcagtttgg ... ctatgtacagGGTGAACAAGATGTTGATTCTTCTGCTACATCGCTAAACAATGAGCCCAAT
EST: gi|60348331|gb|DN215304.1|DN215304
EST:     ATTGTATATTCTCCAATGAGCAATCACCTGATTTTCAGAAATGCTATCAG                         GGTGAACAAGATGTTGATTCTTCTGCTACATCGCTAAACAATGA
genomic: ATTGTATATTCTCCAATGAGCAATCACCTGATTTTCAGAAATGCTATCAGgtcagtttgg ... ctatgtacagGGTGAACAAGATGTTGATTCTTCTGCTACATCGCTAAACAATGA
EST: gi|32943462|gb|CF048281.1|CF048281
EST:     GAGCAATCACCTGATTTTCAGAAATGCTATCAG                         GGTGAACAAGATGTTGATTCTTCTGCTACATCGCTAAACAATGAGCCCAAT
genomic: GAGCAATCACCTGATTTTCAGAAATGCTATCAGgtcagtttgg ... ctatgtacagGGTGAACAAGATGTTGATTCTTCTGCTACATCGCTAAACAATGAGCCCAAT