1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGGCTCTCAGTGACGGCATCAGCGGTTTCCCCTCCCGCCTCTCGCCAGTCGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccccctctctctgtctcctcccgcctccggtggatcgtcaacggcgcccggccccggcggctgcgccgtgcgcggtctgagggcaggagccag...
species | Zea mays |
transcript | GRMZM2G153569_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|76285318|gb|DV024886.1|DV024886
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|13237021|gb|BG355035.1|BG355035
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACTGTTCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|61117414|gb|DN558375.1|DN558375
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCTCGCCTCCGGTCCACCGCACACCGGCCGGTCACCCTGC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|211291795|gb|FL131038.1|FL131038
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: YGCATCACGCCCTCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTGC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|76926349|gb|DV170823.1|DV170823
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|67012865|gb|CO441614.1|CO441614
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|31557965|gb|CD527177.1|CD527177
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGTTTATGGCCGTTTCTTTTGCAAATGTEST: gi|211291796|gb|FL131039.1|FL131039
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCTCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTGC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|211437727|gb|FL330573.1|FL330573
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|67037468|gb|CO464282.1|CO464282
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCTCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTGC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|211535307|gb|FL356762.1|FL356762
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|67016304|gb|CO445053.1|CO445053
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|211255757|gb|FL351785.1|FL351785
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|211232671|gb|FL320353.1|FL320353
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGTEST: gi|60359229|gb|DN226202.1|DN226202
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
EST: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTAC ATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
genomic: CGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccc ... gtgccgtcagATTACTTGCTAATCTTTCTTGAGGGCAGATGGCCGTTTCTTTTGCAAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGCTCTCAGTGACGGCATCAGCGGTTTCCCCTCCCGCCTCTCGCCAGTCGCATCACGCCCCCGCCTCCGGTCCACCGCACACCGGCCGGTGACCCTACgtgcgtaccccctctctctgtctcctcccgcctccggtggatcgtcaacggcgcccggccccggcggctgcgccgtgcgcggtctgagggcaggagccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccggc