Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggtagcaccctagatctgtcgccccggtgctccacaggatctattttgggaaggttcactggttctaatggaacatggccagagtcaaagtca...

Basic information

species Zea mays
transcript GRMZM2G152827_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152827_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g52860.1 (Oryza sativa), 5'ss of exon 1
GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggtagcac-cctagatctgtcgccccggtgctccacaggatctattttgggaaggttcactggt---tctaatggaacatggccagagtcaaagtca
|||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  ||  | || ||| |||||||  ||| | ||       |    | |    |    | ||  | ||   |||  ||  |  | |      || | |   
GCCGGCGTTCTACGCCGCCTGCACTGCCGGTGGGATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCGCTCGACCTCGTCAAGTGCAACATGCAGgtgagttgggggaacgcctggatctgtgaccctgctggctt-tggcgcttctgggagccctgctccttcgtagatctggtgatatttagttttgttcgatg---

upper sequence: GRMZM2G152827_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G05450.1 (Glycine max), 5'ss of exon 1
GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggtagcaccctagatctgtcgccccggtgctccacaggatctattt-tgggaaggttcactggttctaatggaacatggccagagtcaaagtca---
 || |||||||| ||||||||||| ||||| ||||||  |||||| || ||||| |||||||||||||| ||||| ||||| |||||||| |||||||||||   |   |  | | ||   ||| || |        |  | |  || ||| | |    |  |  |   ||  || ||      |     | ||    |     
CCCTGCCTTCTACGCCGCCTGCACCGCCGGTGGAATCCTCAGCTGTGGCCTCACTCACATGGCCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAGgttctc---tctctctctctctctctctctatatatatatatat-atatatatatatatatatcgatctgtcttattgtgcttagatttaactctgtttttgtt

upper sequence: GRMZM2G152827_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA19G27380.1 (Glycine max), 5'ss of exon 1
GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggtagcaccctagatctgtcgccccggtgctccacagg-atctattttgggaaggttcactggttctaatggaacatggccaga-gtcaaagtca-
 || |||||||| ||||||||||| ||||| ||||||  |||||| || ||||| |||||| ||||||| ||||| ||||| |||||||| |||||||||||   |   |  | | ||   ||| || | |     ||  | |   || ||| |    |    |   |   | ||     | ||    | |  || |  | | 
CCCCGCCTTCTACGCCGCCTGCACCGCCGGTGGAATCCTCAGCTGTGGCCTCACTCACATGACCGTCACTCCTCTTGACCTAGTCAAGTGTAATATGCAGgtcctc---tctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatcgatctgac

upper sequence: GRMZM2G152827_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ31006 (Selaginella moellendorffii), 5'ss of exon 1
GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggtagcaccctagatctgtcgccccggtgctccacaggatctattttgggaaggttcactggttctaatggaacatggccagagtcaaagtca
|||||  |||||||| || ||||||| ||| || ||    |||||||| ||||| |||| |||||| |||||| | ||| | |||||||| ||||||||||| |||  | |    |     |    ||    | || |  |  |  ||| |  |  |                                           
GCCGGAATTCTATGCGGCGTGCACTGTCGGGGGGATTCTTAGCTGCGGCCTCACTCACACGGCCGTGACGCCTTTGGACATGGTCAAGTGTAATATGCAGgtaagctcg-attttctggtttaaagcgtgtggctgatgaatggattctttgctcag-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149083065|gb|EE172322.2|EE172322
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|60352946|gb|DN219919.1|DN219919
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|149071118|gb|EE159518.2|EE159518
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148940034|gb|EC884775.2|EC884775
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|149078083|gb|EE166829.2|EE166829
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148974726|gb|EE025537.2|EE025537
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|149100650|gb|EE186738.2|EE186738
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148987197|gb|EE031029.2|EE031029
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148961139|gb|EE011847.2|EE011847
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|32918906|gb|CF023718.1|CF023718
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|9254641|gb|BE345109.1|BE345109
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|15632582|gb|BI679675.1|BI679675
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148941369|gb|EC886279.2|EC886279
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148965792|gb|EE016675.2|EE016675
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|32829672|gb|CD969350.1|CD969350
EST:     TCACCCACATGGCCGTCACGCCTCTAGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|31998469|gb|CD662090.1|CD662090
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|149077800|gb|EE166522.2|EE166522
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|9028627|gb|BE238667.1|BE238667
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148948946|gb|EC894365.2|EC894365
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|14717693|gb|BI245343.1|BI245343
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|33101096|gb|CF061056.1|CF061056
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|149098907|gb|EE184920.2|EE184920
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|67018623|gb|CO447372.1|CO447372
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148940816|gb|EC885643.2|EC885643
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|211295734|gb|FL225227.1|FL225227
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148931799|gb|EC877243.2|EC877243
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|211295738|gb|FL225231.1|FL225231
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148979012|gb|EE026450.2|EE026450
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATC
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCC-AGCGAAATACAAGAGTATCTCATCTGGATTTGGTATC
EST: gi|15198870|gb|BI423526.1|BI423526
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|30031968|gb|CB833819.1|CB833819
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148964179|gb|EE015347.2|EE015347
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|60352947|gb|DN219920.1|DN219920
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|31355004|gb|CD439361.1|CD439361
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|22819388|gb|BU499478.1|BU499478
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|149099246|gb|EE185278.2|EE185278
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|149009024|gb|EE041211.2|EE041211
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148960994|gb|EE011693.2|EE011693
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|211295741|gb|FL225234.1|FL225234
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|28931318|gb|CB334679.1|CB334679
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148934148|gb|EC878167.2|EC878167
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|32847723|gb|CD987404.1|CD987404
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|31612076|gb|CD568698.1|CD568698
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148931514|gb|EC874554.2|EC874554
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|31355577|gb|CD439934.1|CD439934
EST:     TCACCCTTTTTGTCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|71433232|gb|DR814282.1|DR814282
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148987302|gb|EE031141.2|EE031141
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|32828792|gb|CD968470.1|CD968470
EST:     TCACCCACATGGCCGTCACGCCTCTAGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|32850164|gb|CD989845.1|CD989845
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148967944|gb|EE019256.2|EE019256
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148942448|gb|EC887466.2|EC887466
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148939624|gb|EC884260.2|EC884260
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|149049813|gb|EE048499.2|EE048499
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|15660833|gb|BI698204.1|BI698204
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|32848859|gb|CD988540.1|CD988540
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|8367291|gb|BE050236.1|BE050236
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCT
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCT
EST: gi|60356630|gb|DN223603.1|DN223603
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|211295742|gb|FL225235.1|FL225235
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|29543605|gb|CB603985.1|CB603985
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|149083626|gb|EE172969.2|EE172969
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|93015641|gb|EB641161.1|EB641161
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|31355379|gb|CD439736.1|CD439736
EST:     TCACCCACATGGTCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|87156328|gb|DY401117.1|DY401117
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|23357619|gb|BU645268.1|BU645268
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|148945814|gb|EC891102.2|EC891102
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
EST: gi|33099867|gb|CF059827.1|CF059827
EST:     TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAG                         ATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA
genomic: TCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 543

GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTAAAGGAGCAAGGGGCCAGGGGTTTCTTCAGGGGATGGGTGCCTACTTTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 628

GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTAAAGGAGCAAGGGGCCAGGGGTTTCTTCAGGGGATGGGTGCCTACTTTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 877

GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTAAAGGAGCAAGGGGCCAGGGGTTTCTTCAGGGGATGGGTGCCTACTTTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 780

GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggt ... ttttttccagATTGACCCAGCGAAATACAAGAGTATCTCATCTGGATTTGGTATCCTGTTAAAGGAGCAAGGGGCCAGGGGTTTCTTCAGGGGATGGGTGCCTACTTTGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGGCCTTCTATGCCGCCTGCACTGCCGGAGGAATCGCCAGCTGCGGGCTCACCCACATGGCCGTCACGCCTCTCGACCTCGTCAAGTGCAATATGCAGgtgagcgggtagcaccctagatctgtcgccccggtgctccacaggatctattttgggaaggttcactggttctaatggaacatggccagagtcaaagtca

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