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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTCCGACCACCGGGGAGCACCGGATGGGGACTACCATCGTCGGGGTCTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctttcgctcgtatcgatctatgtatgccgcaggagatcctatcgcgggtaggggtagatttggcgaaggatggcgttccgggcctaggttttc...

Basic information

species Zea mays
transcript GRMZM2G152775_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152775_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g53060.2 (Oryza sativa), 5'ss of exon 1
GAGGCTCCGACCACCGGGGAGCACCGGATGGGGACTACCATCGTCGGGGTCTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctttcgctcgtatcgatctatgtatgccgcaggagatcctatcgcgggtaggggtagatttggcgaaggatggcgttccgggcctaggttttc-------
||   ||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | |||||||||||| |||||||| |||| |||    | |   |  ||||    |    |      |     |   | || | ||| |  |  ||| |  || ||||||  |||||| |  |||         
GACAATCCCACCTCCGGGGAGCACCGGATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCCGCCGATTCCAGAACCAGCACCGgtatgcctcgacacc--tcccgatgcgggagatctcttcca----ttgatgtggttggggtttaacgtggagccgg-tggcgtcgcgggcccaattttgatgcaaaa

upper sequence: GRMZM2G152775_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g04800.1 (Oryza sativa), 5'ss of exon 1
GAGGCTCCGACCACCGGGGAGCACCGGATGGGGACTACCATCGTCGGGGTCTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctttcgctcgtatcgatctatgtatgccgcaggagatcctatcgcgggtaggggtagatttggcgaaggatggcgttccgggcctaggttttc
|| || || ||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | |||||| ||| |||||||||| ||||||| |   || ||        |        ||   |   || |||    | |  ||  |    ||      | ||   ||||| | | |   |  | 
GACGCCCCCACCTCCGGGGAGCACCGGATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCCGCCGACTCCCGGACCAGCACCGgtacgctcccccgatcccccacccccgatccgacccttgtttatgctaggttgcggtggatttttgttattagcgcatctggttcctgccatccatcctg

upper sequence: GRMZM2G152775_T04 (Zea mays), 5'ss of exon 1
lower sequence: Vv04s0008g02850.t01 (Vitis vinifera), 5'ss of exon 1
---GAGGCTCCGACCACCGGGGAGCACCGGATGGGGACTACCATCGTCGGGGTCTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctttcgctcgtatcgatctatgtatgccgcaggagatcctatcgcgggtagggg-tagatttggcgaaggatggcgttccgggcctaggttttc-
     ||  | ||   |      ||||   ||||| || || ||| | || |||  |||| | || || |||||||| |||||||| ||||| |||||||||||||| ||   ||| |  |||     ||  |   | |   |    |  |     |  || |  || ||    | ||   |   | | |     ||  |||   
GTAATGGACCTGAATGC---ACCGCACACCATGGGAACGACTATCATTGGAGTCACCTACAATGGTGGTGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTGgtac-cctcctcgttt-tattttcttaaattctctgtttggttgctgagaaaagaaagagaatatataaaacaaaaagtttggattcttttttaaatttctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211419582|gb|FK988615.1|FK988615
EST:     CTGCTACGAGGGCGGCGTCGTCCTNGGCTCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
EST: gi|161589696|gb|EY963443.1|EY963443
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGTCTTCA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTG-CTTCA
EST: gi|76014048|gb|DT941218.1|DT941218
EST:     CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTG                         GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA
genomic: CTGCTACGAGGGCGGCGTCGTCCTGGGCGCCGATTCCAGGACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACTCAACTGACAGACA