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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACGCCGCGAGTCTCAGGTGGTATCCGTCATAAGCCGCGCCCCACGCCCCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgaccctcctctcctcctctcctcctcgtactgattcattgggctgttaccgcgagctggtgtggtggacactggactgggagccccgcatccc...

Basic information

species Zea mays
transcript GRMZM2G152686_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152686_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g47080.1 (Oryza sativa), 5'ss of exon 1
AGGACGCCGCGAGTCTCAGGTGGTATCCGTCATAAGCCGCGCCCCACGCCCCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtag-cgtgaccctcctctcctcctctcctcctcgtactgattcattgggctgttaccgcgagctggtgt----ggtggacactggactgggagccccgcatccc
 |  |||||||||||    ||    ||||| || ||||||||||| || | ||| |||| |||||||||||||||| ||||||||||||||| ||| |||||   |   | |   |||||||| |   ||  |       ||      ||  | || |  |   |         ||||||    |||  ||  |    |      
GGCGCGCCGCGAGTCCGCCGTCACGTCCGTGATTAGCCGCGCCCCGCGTCTCGACGCCGAGGTGCTGCCGGTGTCGGCCGACGACGACGCGGACGTGAAGgttctctctatctctctctcctcgtactcttttgactggtatctcgcaggtcgctagctgggtttatccccccgggtggatttgggatgggatggagtgt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211275902|gb|FL097613.1|FL097613
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277714|gb|FL097630.1|FL097630
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211279519|gb|FL097642.1|FL097642
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211274089|gb|FL097603.1|FL097603
EST:     TGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: TGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277712|gb|FL097628.1|FL097628
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211275904|gb|FL097615.1|FL097615
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277722|gb|FL097638.1|FL097638
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211275907|gb|FL097618.1|FL097618
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|148961971|gb|EE012768.2|EE012768
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|148957677|gb|EC903791.2|EC903791
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211274092|gb|FL097606.1|FL097606
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211275899|gb|FL097610.1|FL097610
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277710|gb|FL097626.1|FL097626
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211275905|gb|FL097616.1|FL097616
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277717|gb|FL097633.1|FL097633
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAANAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277716|gb|FL097632.1|FL097632
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211279517|gb|FL097640.1|FL097640
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211275903|gb|FL097614.1|FL097614
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211275906|gb|FL097617.1|FL097617
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211274091|gb|FL097605.1|FL097605
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277715|gb|FL097631.1|FL097631
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|148934386|gb|EC878416.2|EC878416
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211275898|gb|FL097609.1|FL097609
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211275912|gb|FL097623.1|FL097623
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAANAANCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277713|gb|FL097629.1|FL097629
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211279522|gb|FL097645.1|FL097645
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|71426208|gb|DR807258.1|DR807258
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277721|gb|FL097637.1|FL097637
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277709|gb|FL097625.1|FL097625
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211279520|gb|FL097643.1|FL097643
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|91873329|gb|EB403286.1|EB403286
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211279516|gb|FL097639.1|FL097639
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|67041095|gb|CO467350.1|CO467350
EST:     CCGATGCCGGTTTGCTTTCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211274093|gb|FL097607.1|FL097607
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211274094|gb|FL097608.1|FL097608
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211277719|gb|FL097635.1|FL097635
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|148974537|gb|EE025324.2|EE025324
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211275901|gb|FL097612.1|FL097612
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|5566984|gb|AI881895.1|AI881895
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
EST: gi|211279523|gb|FL097646.1|FL097646
EST:     CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAG                         GAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA
genomic: CCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 134

AGGACGCCGCGAGTCTCAGGTGGTATCCGTCATAAGCCGCGCCCCACGCCCCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCAGCAAATGGCGTGTGGTCTAAACCAAATGTAAGGCGCAAGACAAAGATTG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 74

AGGACGCCGCGAGTCTCAGGTGGTATCCGTCATAAGCCGCGCCCCACGCCCCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCAGCAAATGGCGTGTGGTCTAAACCAAATGTAAGGCGCAAGACAAAGATTG


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 30

AGGACGCCGCGAGTCTCAGGTGGTATCCGTCATAAGCCGCGCCCCACGCCCCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCAGCAAATGGCGTGTGGTCTAAACCAAATGTAAGGCGCAAGACAAAGATTG


Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 141

AGGACGCCGCGAGTCTCAGGTGGTATCCGTCATAAGCCGCGCCCCACGCCCCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgac ... tcttttacagGAAGAAGCAAACTTCCAGCACCTTAAGGCTATCCAGCAACTTGCAACTGCAGCAAATGGCGTGTGGTCTAAACCAAATGTAAGGCGCAAGACAAAGATTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGACGCCGCGAGTCTCAGGTGGTATCCGTCATAAGCCGCGCCCCACGCCCCGATGCCGGGGTGCTGCCGGTGTCGCCCGACGACGACGCGGCCGTAAAGgtagcgtgaccctcctctcctcctctcctcctcgtactgattcattgggctgttaccgcgagctggtgtggtggacactggactgggagccccgcatccc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccccgc