ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GAAGCAGCGGCTGGGAGCAAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcagcgcactcgcttggtcgatcccacgttgtttctgttcgtgcaggttgtagagataggattctcgctgatttgttcatgttttggttaggag...

Basic information

species	Zea mays
transcript	GRMZM2G152573_T04
intron #	1
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 1

GAAGCAGCGGCTGGGAGC-AAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaa---gatcag---cgcact-----cgctt--ggtcgatcccacgtt-gtttctgttcgtgcag-gttgtagagataggattctcg---ctgatttgttc--------atgttttggttaggag----------------
  |||     |      | |||||||||||||| ||||||||||| |||||||||||||| |||||||| || |||||   | | |||||||| || ||||||||    |||     | ||||      ||||  | |||   | |  || |||| ||||  ||    ||| || | | |   || | |    | ||| ||||        | || ||| || |                   
-GAGCGTGATCCATTGACGAAGATGGTGCAGCGTCTCACCTACCGCAAGCGGCACAGCTATGCCACCAAGTCCAACCAACACAGGGTCGTCAAAACCCCTGgtaatcaaatccctccctcactgattatgcttcggatcggaacaatttttgtttttgtttttgttttgttttaaaaaaaaagtttttggtattaattggttctgctgggtacgtcttgtttggttctgtgggaataatgcag

upper sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G41280.1 (Glycine max), 5'ss of exon 1

-GAAGCAGCGGCTGGGAGCAAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcagcgcactcgcttggtcgatcccacg--ttgtttctgttcgtg-caggttgtagagataggattct-cgctgattt---gttcatgttttggttaggag--------------------
 |||| ||| | | |||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||  | | ||||||||||| || |||||    |      ||||| |    |   |     || ||     ||  | |  ||||| |   |  |   |  ||  |  |        || ||||  |  |  |                    
GGAAGAAGCTGATCGGAG-AAGATGGTGCAGCGTCTCACCTACCGCAAGCGCCACAGCTATGCCACCAAATCCAACCAGCACAGAGTCGTCAAGACTCCCGgtaaataaactctcttcgctcgcctcacatcgtcgtttattctcactcacggcgcgttgtcgttttgcgccgccgcgagggctccaaaaatatattttaatgtgcggttgctgattgttgaatgcag

upper sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA18G14980.1 (Glycine max), 5'ss of exon 1

-GAAGCAGCGGCTGGGAGCAAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcagcgcactcgcttggt-cgatcccacgttgtttctgtt--cgtgcaggttgtagagataggattctcg---ctgatttgttcatgttttggttaggag----------
 |||| ||| | |  ||| |||||||||||||| ||||||||||| || || |||||||| || |||||||| ||||||  | | ||||||||||| || |||||  |     | ||||||| |     ||     || |  ||  |  ||||  | |||    |  ||  ||||       || |      ||   ||| | |  |          
GGAAGAAGCTGATCCGAG-AAGATGGTGCAGCGTCTCACCTACCGCAAACGCCACAGCTATGCTACCAAATCCAACCAGCACAGAGTCGTCAAGACTCCCGgtaaactgtcttcgctcgcttcgcatcgtcgtttattctcactcatggcgtgtcgtttgcgccgcgagtgttctaaaaatagactgtaatgtgcggtggctggttgttgaatgcag

upper sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G11920.1 (Glycine max), 5'ss of exon 1

GAAGCAGCGGCTGGGAGC-AAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcagcgcactcgcttggtcgatcccacgttgtttctgttcgtgcaggttgtagagataggattctcgctgatttgttc---atgtt--ttggttaggag------------------------------------
  |||     |      | |||||||||||||| ||||||||||| ||| |||||||||| ||||||||||| |||||   | | |||||||| || ||||||||  |||   | |||  | ||     | |||    | |  | |  |||   | | |  |  |  ||| | |||  ||  ||     | ||  ||||||  ||                                     
-GAGCGTGATCCATTGACGAAGATGGTGCAGCGTCTCACCTACCGCAAGAGGCACAGCTATGCCACCAAATCCAACCAACACAGGGTCGTCAAAACCCCTGgtaa--tcaaatccctc-ttcggaacccctcactcactcttcgattatgct--tcgaatcggaacaatttttgctttttaattttgggtattaattggttctgacgggtatgttgtgtttggtgatgtgggaataatgcag

upper sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 1
lower sequence: AT1G26880.1 (Arabidopsis thaliana), 5'ss of exon 1

GAAGCAGCGGCTGGGAGCAAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcagcgcactcgcttggtcgatcccacgttgtttctgttcgtgcaggttgtagagataggattctc-----gctgatttgttcatgttttggttaggag---------------------
 ||  ||     | |   || ||||||||||| ||    ||||||  ||| |||||||||||||||||||||||||||  |||  |||||||||| || |||    |       ||  |||  ||  | ||  | | | |    ||      | | |||    |  ||||||      | ||| ||||| |  |   || | | |                     
AAAAGAGAAAAGGAGGCGAAAATGGTGCAGCGTCTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAGACTCCAGgtccctttcttcttctt-cttcttc--ttccttgatatcttcaatctcctctgctttagtctcataattctctaatcaccgatctgttcttcatagtgtaatgtgtgttgggattgttgatttcag

upper sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 1
lower sequence: Vv14s0108g00850.t01 (Vitis vinifera), 5'ss of exon 1

-GAAGCAGCGGCTGGGAGCAAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcagcgca-----ctcgcttggtcgatcccacgttgtttctgttcgtgc---aggttgtagagataggatt-ctcgctgatttgttcatgttttggttaggag
 | ||  | |  ||   | || ||||| ||||| ||||| ||||| || ||||| ||||| ||||||||||| ||||||  | | |||||||| || |||||| |       | |     || | ||  ||  | |  |  | |||   | | |     || || |   | |    |   | | ||||  |  | ||| ||         
GGGAGGTGAGAGTGCTTG-AAAATGGTCCAGCGTCTCACATACCGCAAACGGCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttctgtaaaacccttggtttttcttttcttcagtattttattgcatctgttagtttatttgggtgatttggtttgttgatcggaacgtgtatt---------

upper sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 1
lower sequence: PP1S76_47V6.1 (Physcomitrella patens), 5'ss of exon 1

GAAGCAGCGGCTGGGAGCAAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcagcgcactcgcttggtcgatcccacgtt------gtttctgttcgtgc---aggttgtagagataggattctcgc------tgatttgtt--catgttttggttaggag------------------------------------------
   |  | |   ||   ||  |||||||||||  | |||||| ||  ||| ||| |||| ||||||||||| |||||||| || || |||||||| |||||| |||    | | | |   |  || |   ||||||      ||||     ||      || || |   | |    |    ||      |||   |||   |||      |   |||                                          
TGTGTGGGGTGGGGTGACACCATGGTGCAGCGTTTGACCTACAGGCGGCGCCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtctctcccccttctcttccagtgcacgttttaggagttttaccccgcatcgaagctttttacggtgaattgaatgcaagggatgaggcgttattatggaccaatcgagagttgatgtctggattgagctttgcgttgttttgtgggatatag

upper sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 1
lower sequence: PP1S200_25V6.1 (Physcomitrella patens), 5'ss of exon 1

GAAGCAGCGGCTGGG--AGCAAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcagcgcactcgcttggtcgatcccacgttgtttctgttcgtgcaggttgtagagataggattctcgc-tgatttgttcatgttttggttaggag----
     | |  ||||     ||  ||||| |||||  | || |||||    || ||| |||| |||||||| ||||||||||||||||| |||||||| || ||||    ||  ||  || ||   ||  |  | ||   |||||   | | | | ||   |       |||   || |  | | ||   |||| ||    |      
--GCTATCTCCTGGTCTGTCACCATGGTTCAGCGATTAACGTACCGTCGCCGCCACTGCTATGCCACCAAGTCGAACCAGACCCGCGTGGTCAAGACCCCAGgta----cactgccttccctctctctttgtcgcgaattttctaggc-tacggatttcggcttagatatttcggcatcgtgttttggggtttggggccagcattgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|9733580|gb|BE512332.1|BE512332

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211381965|gb|FL156730.1|FL156730

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211379324|gb|FL156711.1|FL156711

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|58029444|gb|CX724871.1|CX724871

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|60398264|gb|DN231080.1|DN231080

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211379336|gb|FL156723.1|FL156723

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|5006078|gb|AI712140.1|AI712140

EST:     GCACAGCTACGCCCCCAAATCGAACCAGACCCGCGTCGTCAACCCACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|5108109|gb|AI739822.1|AI739822

EST:     CGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: CGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|15208979|gb|BI430863.1|BI430863

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211086698|gb|FL459706.1|FL459706

EST:     CAAGACCACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAG
genomic: CAAGA-CACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAG

EST: gi|15100525|gb|BI396316.1|BI396316

EST:     GCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211381974|gb|FL156739.1|FL156739

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211384599|gb|FL156742.1|FL156742

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211384597|gb|FL156740.1|FL156740

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|15100606|gb|BI396397.1|BI396397

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211415047|gb|FL462002.1|FL462002

EST:     CGAACCAGACCCGGGTTGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: CGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211379329|gb|FL156716.1|FL156716

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211379335|gb|FL156722.1|FL156722

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211379328|gb|FL156715.1|FL156715

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211086700|gb|FL459708.1|FL459708

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211379333|gb|FL156720.1|FL156720

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211492551|gb|FL462928.1|FL462928

EST:     GCACAG-TACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211381961|gb|FL156726.1|FL156726

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211379337|gb|FL156724.1|FL156724

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211379330|gb|FL156717.1|FL156717

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211379326|gb|FL156713.1|FL156713

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|6031583|gb|AI668485.2|AI668485

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|60397406|gb|DN230222.1|DN230222

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211381962|gb|FL156727.1|FL156727

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|67017356|gb|CO446105.1|CO446105

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|67011017|gb|CO439766.1|CO439766

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|211381966|gb|FL156731.1|FL156731

EST:     GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

EST: gi|30705607|gb|CD058843.1|CD058843

EST:     GCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTG                         GTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT
genomic: GCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 744

GAAGCAGCGGCTGGGAGCAAGATGGTGCAGCGCCTCACCTACCGGAAGCGGCACAGCTACGCCACCAAATCGAACCAGACCCGCGTCGTCAAGACACCTGgtaagatcag ... tgctgattagGTGGGAAACTTGTGTACCAGTACACCAAGAAGCGCGCGAGCGGACCGAAGTGCCCAGTCACCGGGAAGAAGATCCAAGGA

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 800

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 781