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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTTAGCGGCGGCGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccgtctgttcattcctgctcgatatgggaggggtctttggtttctttatctgtgttgtgttcttggttgtattaattggttcgctggattcttgcag

Basic information

species Zea mays
transcript GRMZM2G152552_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 1
GGGTTTAGCGGCGGCGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccgtctgttcattcctgctcgatatgggaggggtct---ttggtttctttatctgtgttgtgttcttggttgtattaattggttcgctggattcttgcag
 |     ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||| | |||||||||||||||||| ||     || |||| | | ||    || |    |  | ||    ||||||||| ||||||      ||  || | || ||   ||||    ||  || ||||||
CGCGGCGGCGGCGGTGGCGAGATGGTGCAGCGGCTCACCTACCGGAAGCGTCACAGCTACGCGACTAAGTCGAACCAGACCAGGGTCGTCAAGACCCCAGgtacgg---atccgttcttgcttgaagaattttcttgttgcctggtgtggtttcttgatctgttgcagatttgtgat-gtgtttggtggtggattg--ttgttgcag

upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 1
GGGTTTAGCGGCGGCGGCGA-GATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgt--tcg---ccccgtctgttcattcctgctcgatatgggaggggtctttggtttctttatctgtgttgtgttc---------ttggttgtattaattggttc-gctggattcttgcag------------------------
| |  |     |   | ||| |||||||||||| ||||| ||||| ||||| |||||||| || || |||||||||||   | | |||||||| ||||| |||  ||    |||   ||      |  ||||    || |||    | |||| ||| | | | ||| |||| ||          ||  | |||||||||||||| ||||| | | |   |                        
GAGCGTGATC-CATTGACGAAGATGGTGCAGCGTCTCACCTACCGCAAGCGGCACAGCTATGCCACCAAGTCCAACCAACACAGGGTCGTCAAAACCCCTGgtaatcaaatccctccctcactgattatgcttcggatcggaacaatttttg-tttttgtttttgttttgttttaaaaaaaaagtttttggtattaattggttctgctgggtacgtcttgtttggttctgtgggaataatgcag

upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G41280.1 (Glycine max), 5'ss of exon 1
GGGTTTAGCGGCGGCGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgt-----------------tcgccccgtctgttcattcctgctcgatatgggaggggtctttggtttctttatctgtgttgtgttcttggttgtattaattggttcgctggattcttgcag-------
||    ||| |    |   ||||||||||||| ||||| ||||| ||||| |||||||| || || || |||||||||  | ||||||||||||| || |||                 ||||| |   |  || ||  | |||  |    |  | ||  | | |||      | | |  |  | |     | ||||     || || | | |  |||  |       
GGAAGAAGCTGATCGGAGAAGATGGTGCAGCGTCTCACCTACCGCAAGCGCCACAGCTATGCCACCAAATCCAACCAGCACAGAGTCGTCAAGACTCCCGgtaaataaactctcttcgctcgcctcacatcgtcgtttattctcact-cacggcgcgttgtcgttttgcgccgccgcgagggctccaaaaatatattttaatgtgcggttgctgattgttgaatgcag

upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA18G14980.1 (Glycine max), 5'ss of exon 1
GGGTTTAGCGGCGGCGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccgtctgttcattcctgctcgatatgggaggggtctttggtttctttatctgtgttg----tgttcttggt-tgtattaattggttcgctggattcttgcag-------
||    ||| |   ||   ||||||||||||| ||||| ||||| || || |||||||| ||||| || |||||||||  | ||||||||||||| || |||   |    |  | ||  | |   |||   |         ||   |     |  | || |  |    ||||||     |  | |     || || ||| |  |||  |       
GGAAGAAGCTGATCCGAGAAGATGGTGCAGCGTCTCACCTACCGCAAACGCCACAGCTATGCTACCAAATCCAACCAGCACAGAGTCGTCAAGACTCCCGgtaaactgtcttcgctcgcttcgcatcgtcgtttattctcactcatggcgtgtcgtttgcgccgcgagtgttctaaaaatagactgtaatgtgcggtggctggttgttgaatgcag

upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S57_72V6.1 (Physcomitrella patens), 5'ss of exon 1
GGGTTTAGCGGCGG--CGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgc---cccgtctgttcattcctgctcgatatgggaggggtctttggtttctttatctgtgttgtgttcttggttgtattaattggttcgctgg---attcttgcag-------------------------
  |   ||||  ||  || |   ||||||||||| || ||||| |||   || ||| ||||||| || ||||||||||||||||| || ||||||||||| ||| ||    | | ||   ||  ||  || |  | |   |||    | | |    |  ||||    || |||  || ||||    | |  |  |  |    |   | || |                         
--GAAAAGCGAAGGTCCGTCACTATGGTGCAGCGACTGACGTATCGGCGTCGCCACTGCTACGCCACTAAGTCCAACCAGACCCGTGTTGTCAAGACCCCTGgtgcgaacactcatcccctcgctctcgc-cactcttttaggtcattgttgcccttggatctcccctgagtttgtgcttgttgcgactcatcggtggagaaaaattggctgaagggttctctggttgtgtacgtag

upper sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S2_268V6.1 (Physcomitrella patens), 5'ss of exon 1
GGGTTTAGCGGCGGCGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgc---cccgtctgttcattcctgctcgatatgggaggggtctttggttt---ctttatctgtgttgtgttcttggttgtattaattggttcgctggattc--ttgcag----------------------
                     |||||||||||  | ||||| |||   || ||| ||||||| || ||||||||||||||||| || ||||||||||| ||| |     | | ||   ||  ||  ||      |    |   |  |||   |    | |  |     | ||| |||| |   |   || |||     | | |    || ||                      
---------------------ATGGTGCAGCGATTGACGTATCGGCGTCGCCACTGCTACGCCACTAAGTCCAACCAGACCCGTGTTGTCAAGACCCCTGgtgcaaacactcatcccctcgctctcgccactcttttaggtcattgttgccctaggttctcccctgagtctgtacttgttgcgacgcatcggtggagagcaattggctgaagggttcgctggttgtgtacgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32908558|gb|CF013371.1|CF013371
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|60340593|gb|DN207566.1|DN207566
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|15208720|gb|BI430604.1|BI430604
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211075792|gb|FL122631.1|FL122631
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTGAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211075783|gb|FL122622.1|FL122622
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|19770210|gb|BQ034931.1|BQ034931
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|32937599|gb|CF042418.1|CF042418
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|15499395|gb|BI595908.1|BI595908
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|30031693|gb|CB833544.1|CB833544
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|9255232|gb|BE345700.1|BE345700
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211075789|gb|FL122628.1|FL122628
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGG
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGG
EST: gi|32846789|gb|CD986470.1|CD986470
EST:     TCACAGTTACGCTTCGAAGTCCAACCAGATCCGAGTCGTCAAGACCCCAG                         TCGGTAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|30031692|gb|CB833543.1|CB833543
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|60352266|gb|DN219239.1|DN219239
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|32910557|gb|CF015369.1|CF015369
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|16919052|gb|BM074017.1|BM074017
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|15198797|gb|BI423490.1|BI423490
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGC-TGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|15427013|gb|BI542835.1|BI542835
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211075786|gb|FL122625.1|FL122625
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|71770590|gb|DR968527.1|DR968527
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|32911317|gb|CF016129.1|CF016129
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211075787|gb|FL122626.1|FL122626
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|8930357|gb|BE225121.1|BE225121
EST:     ACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: ACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211075788|gb|FL122627.1|FL122627
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211075791|gb|FL122630.1|FL122630
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211075781|gb|FL122620.1|FL122620
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211078527|gb|FL122635.1|FL122635
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|32857276|gb|CD996957.1|CD996957
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|45567828|gb|CK985766.1|CK985766
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|60342856|gb|DN209829.1|DN209829
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|5566758|gb|AI881624.1|AI881624
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
EST: gi|211075784|gb|FL122623.1|FL122623
EST:     TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAG                         GCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT
genomic: TCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 387

GGGTTTAGCGGCGGCGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGTGCCCCGTCACCGGGAAGAAAATCCAGGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 163

GGGTTTAGCGGCGGCGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGTGCCCCGTCACCGGGAAGAAAATCCAGGGG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 145

GGGTTTAGCGGCGGCGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGTGCCCCGTCACCGGGAAGAAAATCCAGGGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 183

GGGTTTAGCGGCGGCGGCGAGATGGTGCAGCGCCTCACGTACCGGAAGCGTCACAGCTACGCTACGAAGTCCAACCAGACCCGAGTCGTCAAGACCCCAGgttcgccccg ... attcttgcagGCGGGAAGCTTGTGTACCAGTACACCAAGAAGAGGGCGAGCGGGCCCAAGTGCCCCGTCACCGGGAAGAAAATCCAGGGG