Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGACCACCCGGCCAGGAGCGACGGATCGCTGAAGCTGCTCGTCGTCGGGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccgcgccatcttatacattcctagttccgaacttccgattactgcaagttagtgcgtacttcaaacaccttggccttcaacgccgttactgtt...

Basic information

species Zea mays
transcript GRMZM2G152447_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78088303|gb|DV516696.1|DV516696
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211476860|gb|FL068538.1|FL068538
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCCGGGAGAAACTCCATATCCACTTT
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTT
EST: gi|211476859|gb|FL068537.1|FL068537
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211474339|gb|FL068524.1|FL068524
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|149107456|gb|EE189334.2|EE189334
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|78110600|gb|DV529008.1|DV529008
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211474341|gb|FL068526.1|FL068526
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|91055272|gb|EB165690.1|EB165690
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|91876187|gb|EB406144.1|EB406144
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|78086367|gb|DV514760.1|DV514760
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211474333|gb|FL068518.1|FL068518
EST:     GGGACTGGGGACGCAAGGGGACTCACA-CCAGTCCCGGGTCGCCGAC-AG                         ATGGGAAGGGTCGGG-AGAA-CTCGATATCGACTTTGT-ATATCCA
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCA
EST: gi|211471810|gb|FL068510.1|FL068510
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATAT
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATAT
EST: gi|211476854|gb|FL068532.1|FL068532
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211474338|gb|FL068523.1|FL068523
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTT
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTT
EST: gi|211471811|gb|FL068511.1|FL068511
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTAATATCCACCGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGG
EST: gi|78109969|gb|DV528384.1|DV528384
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211476863|gb|FL068541.1|FL068541
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|148986503|gb|EE030253.2|EE030253
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211474330|gb|FL068515.1|FL068515
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTT
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTT
EST: gi|211474340|gb|FL068525.1|FL068525
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCTACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211471808|gb|FL068508.1|FL068508
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|76288593|gb|DV028161.1|DV028161
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|91872645|gb|EB402602.1|EB402602
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211471813|gb|FL068513.1|FL068513
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|91054359|gb|EB164777.1|EB164777
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211476858|gb|FL068536.1|FL068536
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|71312265|gb|DR792656.1|DR792656
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|148960480|gb|EE011076.2|EE011076
EST:     GGACTGGGGACGCAAGGAGACTCAACA-CCAGTCCCGGGTCGCCGACCAA                         ATGGGAAAGGTCGGGGAGAAGCTCGTTATCAACTTTGTT
genomic: GGACTGGGGACGCAAGGGGACTCA-CAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTT
EST: gi|211476855|gb|FL068533.1|FL068533
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|50328961|gb|CO524087.1|CO524087
EST:     GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
EST: gi|211474334|gb|FL068519.1|FL068519
EST:     GGACTGGGGACGCAAGGGGACTCANCA-CCAGTCCCGGGTCGCCGACCAG                         ATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG
genomic: GGACTGGGGACGCAAGGGGACTCA-CAACCAGTCCCGGGTCGCCGACCAGgtaacggccg ... tcttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGACCACCCGGCCAGGAGCGACGGATCGCTGAAGCTGCTCGTCGTCGGGGACTGGGGACGCAAGGGGACTCACAACCAGTCCCGGGTCGCCGACCAGgtaacggccgcgccatcttatacattcctagttccgaacttccgattactgcaagttagtgcgtacttcaaacaccttggccttcaacgccgttactgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcgcc