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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCGGTTCGGCCCGTCGTGCTCCCCTCCGCACTCTTCTATTGGCCTGGAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgccctaacctagcttgctttggatgttctgttttgcctgcacgtatcttctcccatgcgggtaatgaaatccaaatctcgctttctgggatgg...

Basic information

species Zea mays
transcript GRMZM2G152438_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211116954|gb|FL295789.1|FL295789
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|13237158|gb|BG355172.1|BG355172
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116960|gb|FL295795.1|FL295795
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|33467320|gb|CF244369.1|CF244369
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|50324428|gb|CO519554.1|CO519554
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211117745|gb|FL295806.1|FL295806
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|32808720|gb|CD960954.1|CD960954
EST:     GATCTACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116965|gb|FL295800.1|FL295800
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|91057156|gb|EB167574.1|EB167574
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116957|gb|FL295792.1|FL295792
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|78122154|gb|DV540538.1|DV540538
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116962|gb|FL295797.1|FL295797
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|71433873|gb|DR814923.1|DR814923
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211377342|gb|FK960876.1|FK960876
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|32796484|gb|CD948720.1|CD948720
EST:     GATCCGCCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116162|gb|FL295780.1|FL295780
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|149088304|gb|EE177398.2|EE177398
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116963|gb|FL295798.1|FL295798
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|32796008|gb|CD948244.1|CD948244
EST:     GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|32798898|gb|CD951134.1|CD951134
EST:     GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116169|gb|FL295787.1|FL295787
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTGTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|71431621|gb|DR812671.1|DR812671
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|148933116|gb|EC876752.2|EC876752
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116967|gb|FL295802.1|FL295802
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211117743|gb|FL295804.1|FL295804
EST:     GAGAGCAGCG-AGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|149078224|gb|EE166978.2|EE166978
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116966|gb|FL295801.1|FL295801
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|50324025|gb|CO519151.1|CO519151
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211117746|gb|FL295807.1|FL295807
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|71422888|gb|DR805891.1|DR805891
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116953|gb|FL295788.1|FL295788
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116955|gb|FL295790.1|FL295790
EST:     GAGAGCAGCGGARATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211117749|gb|FL295810.1|FL295810
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|101389349|gb|EB816629.1|EB816629
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116961|gb|FL295796.1|FL295796
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|78081711|gb|DV510123.1|DV510123
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211377341|gb|FK960875.1|FK960875
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|71436518|gb|DR817568.1|DR817568
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|32797706|gb|CD949942.1|CD949942
EST:     GATCCGCCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTCTCCAAAGTG
genomic: GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|32796232|gb|CD948468.1|CD948468
EST:     CCACCAGCAATTTGGAATGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCCCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: CCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116168|gb|FL295786.1|FL295786
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCSTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|78077674|gb|DV506108.1|DV506108
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|13237362|gb|BG355376.1|BG355376
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211117751|gb|FL295812.1|FL295812
EST:     GAGAGCAGCGGAGATCCACCACCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|32799036|gb|CD951272.1|CD951272
EST:     GATCCCCCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211116167|gb|FL295785.1|FL295785
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211117744|gb|FL295805.1|FL295805
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|71439167|gb|DR820217.1|DR820217
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211117747|gb|FL295808.1|FL295808
EST:     GAGAGCAGCG-AGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|211117748|gb|FL295809.1|FL295809
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|76014565|gb|DT941735.1|DT941735
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|32797377|gb|CD949613.1|CD949613
EST:     GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
EST: gi|89761685|gb|DY689600.1|DY689600
EST:     GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTG                         GATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG
genomic: GAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgcc ... catgaaccagGATATACTTGGTCTCCTCGGTGTTGGCTAGGCAATCCAGCTTTCCAAAGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATTCGGTTCGGCCCGTCGTGCTCCCCTCCGCACTCTTCTATTGGCCTGGAGAGCAGCGGAGATCCACCAGCAATTTGGATTGCTTCTCCTTTTTCTTGgtacggcgccctaacctagcttgctttggatgttctgttttgcctgcacgtatcttctcccatgcgggtaatgaaatccaaatctcgctttctgggatgg

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC