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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATCCGTAGCGTTCCATTCCATTCCATCCCATccccggaaagtgcaaggacgggagggagagcggccggcgcgtcacaaataccaccagcccaggggccatggccgccgcgatgaccagcttcgtcgccaag...

Basic information

species Zea mays
transcript GRMZM2G152135_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131936|gb|FL382998.1|FL382998
EST:     ATCCGTAGCGTTCCATTCCATTCCATCCCAT                         CTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTG
genomic: ATCCGTAGCGTTCCATTCCATTCCATCCCATccccggaaag ... cgccggccatCTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTG
EST: gi|211378788|gb|FL471300.1|FL471300
EST:     ATCCGTAGCGTTCCATTCCATTCCATCCCAT                         CTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTYTG
genomic: ATCCGTAGCGTTCCATTCCATTCCATCCCATccccggaaag ... cgccggccatCTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTG
EST: gi|211485805|gb|FL428178.1|FL428178
EST:     TTCCATTCCATTCCAT                         CTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTG
genomic: TTCCATTCCATCCCATccccggaaag ... cgccggccatCTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTG
EST: gi|211070680|gb|FL369853.1|FL369853
EST:     TTCCATTCCATTCCAT                         CTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTG
genomic: TTCCATTCCATCCCATccccggaaag ... cgccggccatCTCCCTCCTCGCCTACGGCTTCTTCCACCGCGGCATCGTGCCCGGCCTCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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TCCATCCGTAGCGTTCCATTCCATTCCATCCCATccccggaaagtgcaaggacgggagggagagcggccggcgcgtcacaaataccaccagcccaggggccatggccgccgcgatgaccagcttcgtcgccaag

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