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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGACCTAGGGTTCTTGAGATCCAGCCCCAGGATGGATCCGAACCCTAGAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacctggcccgaccaaatttcggatctttgggttcagggttctttgaatcccgcttcttcactggaatggttgatgagggtcttttgtttgtatgggcag

Basic information

species Zea mays
transcript GRMZM2G151863_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211094828|gb|FL156526.1|FL156526
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTC
EST: gi|211092351|gb|FL156509.1|FL156509
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211097293|gb|FL156532.1|FL156532
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGMCGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCT
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211094822|gb|FL156520.1|FL156520
EST:     AGCTCMMCTCACTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: AGCTCCCCTC-CTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211094831|gb|FL156529.1|FL156529
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211087426|gb|FL156471.1|FL156471
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211089875|gb|FL156485.1|FL156485
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|149008091|gb|EE040331.2|EE040331
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211092345|gb|FL156503.1|FL156503
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGAMGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211097303|gb|FL156542.1|FL156542
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|116817361|gb|EC860203.1|EC860203
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGACGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211092352|gb|FL156510.1|FL156510
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211094821|gb|FL156519.1|FL156519
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211092342|gb|FL156500.1|FL156500
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGGTCTCTCTGGGCCGCCGCGC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGG-TCTCTCTGGGCCGCCGCGC
EST: gi|149055348|gb|EE156262.2|EE156262
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211087431|gb|FL156476.1|FL156476
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211097299|gb|FL156538.1|FL156538
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211092347|gb|FL156505.1|FL156505
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211087427|gb|FL156472.1|FL156472
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211542042|gb|FL156465.1|FL156465
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211097302|gb|FL156541.1|FL156541
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         G---CCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211097294|gb|FL156533.1|FL156533
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211087433|gb|FL156478.1|FL156478
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211089876|gb|FL156486.1|FL156486
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCTCCGAGGACGACGCGTCGGGGGGTCTCTCTGGGCCGCCGCGC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGG-TCTCTCTGGGCCGCCGCGC
EST: gi|211542039|gb|FL156462.1|FL156462
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211094826|gb|FL156524.1|FL156524
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211542045|gb|FL156468.1|FL156468
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
EST: gi|211094819|gb|FL156517.1|FL156517
EST:     GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTG                         GTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC
genomic: GAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacct ... gtatgggcagGTGGCCAGCGCCGAGGACGACGCGTCGGGGGTCTCTCTGGGCCGCCGCGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGGACCTAGGGTTCTTGAGATCCAGCCCCAGGATGGATCCGAACCCTAGAGCTCCCCTCCTCCTCGCCATCGTCGTTCTCGCGCTTGGCGTATCCGTGgtaaagacctggcccgaccaaatttcggatctttgggttcagggttctttgaatcccgcttcttcactggaatggttgatgagggtcttttgtttgtatgggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC