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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCATGTTGATGCCTGCAGGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctagggccgatgcttctgtagctcctgatttataatctatatagaccgaattgcaagtt...

Basic information

species Zea mays
transcript GRMZM2G150867_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150867_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g31000.1 (Oryza sativa), 5'ss of exon 2
CTGCATGTTGATGCCTGCAGGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctag-ggccgatgcttctgtagctcctgatttataatctatatagaccgaattgcaagtt-
                    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| || |||||||  ||||||||| |     ||| ||||   ||||||| | ||||| | ||   ||    ||      |    |  | ||  |  | |       | ||  |  | ||  
--------------------GATGATGAGCGACTACAAGGTGGAGATGGTGAACGATGGGATGCAGGAGTTCTTCGTGGAATTCCGGGGGCCTACTGAAAgtacgatcgcg-cacgcaaatt-ccgattttgtttttcctcctcctggttcctggcctgatgatccgcgtttcttgttttccggtctctgatctagatgtag

upper sequence: GRMZM2G150867_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G37650.1 (Glycine max), 5'ss of exon 2
CTGCATGTTGATGCCTGCAGGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctagggccgatgcttctgtagctcctgatttataatctatatagaccgaattgcaa-gtt---------
                    ||||||||| || ||||||||||| | | | |||||||| ||||| ||||||||||| ||||| |  || || || || ||||   ||   ||         | | |||||  |||| |||  |   ||  || ||  |    |  || | |    ||||| | |  ||| ||  || |||         
--------------------GATGATGAGTGATTACAAGGTGGAGACGATCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAgtaaatttgcatcttttt----gtcaatttattttttgttttcaattcc--tggttgagagattggtgttgt----tctatttggtgcgacttttaacgttgttgtttaa

upper sequence: GRMZM2G150867_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G01940.3 (Glycine max), 5'ss of exon 2
CTGCATGTTGATGCCTGCAGGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctagggccgatgcttctgtagctcctgat--ttataatctatatagaccgaattgcaagtt
            | |  |||||||||||| || ||||||||||| | ||| |||||||| ||||| ||||||||||| ||||| |  || || || || ||||   ||||   || |     | |  ||||  |    ||  ||       | |   | | | |   |||  |  |  ||||| | |  | | ||  ||   
------------GTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAgtaaatttttgcaaccctttgtgtcattttatttccaattattattttttgttcagttcttggttgagatagtgttgttctatttggtgcaacttttaat--

upper sequence: GRMZM2G150867_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G01940.4 (Glycine max), 5'ss of exon 1
CTGCATGT-TGATGCCTGCAGGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctagggccgatgcttctgtagctcctgat--ttataatctatatagaccgaattgcaagtt
   ||||  | | | |  |||||||||||| || ||||||||||| | ||| |||||||| ||||| ||||||||||| ||||| |  || || || || ||||   ||||   || |     | |  ||||  |    ||  ||       | |   | | | |   |||  |  |  ||||| | |  | | ||  ||   
-GACATGGATCAGGTCATCAGGATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAgtaaatttttgcaaccctttgtgtcattttatttccaattattattttttgttcagttcttggttgagatagtgttgttctatttggtgcaacttttaat--

upper sequence: GRMZM2G150867_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G07540.3 (Glycine max), 5'ss of exon 1
CTGCATGTTGATGCCTGCAGGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctagggccgatgcttctgtagctcctgatttataatctatatagaccga-attgcaagtt--------
 |   | ||         ||||||||||| |||||||||||||| ||| | || ||||| ||||| ||||| | |||  | || | ||| || || || |||| | | |  |              || || |||   |   |  |  |  |  ||   | | |  || |  | ||   |  | |   |  |||||  ||         
TTTTTTTTTTTAATTAATAGGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAgtaagttctcctttgtt------tttatctatgttacttgctttagagctttttttgaattgtttttggtgaaaaa---agttgggttgctattgcgggtgtgtggtaa

upper sequence: GRMZM2G150867_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G01940.1 (Glycine max), 5'ss of exon 2
CTGCATGTTGATGCCTGCAGGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctagggccgatgcttctgtagctcctgat--ttataatctatatagaccgaattgcaagtt
                    ||||||||| || ||||||||||| | ||| |||||||| ||||| ||||||||||| ||||| |  || || || || ||||   ||||   || |     | |  ||||  |    ||  ||       | |   | | | |   |||  |  |  ||||| | |  | | ||  ||   
--------------------GATGATGAGTGATTACAAGGTGGAGACGGTCAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAgtaaatttttgcaaccctttgtgtcattttatttccaattattattttttgttcagttcttggttgagatagtgttgttctatttggtgcaacttttaat--

upper sequence: GRMZM2G150867_T03 (Zea mays), 5'ss of exon 1
lower sequence: AT1G63800.1 (Arabidopsis thaliana), 5'ss of exon 2
CTGCATGTTGATGCCTGCAGGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacg--gttttttcacacaaaaggccgatttaggttttct--ttctagggccgatgcttct-gtagctcctgat--ttataatctatatagaccgaattgcaagtt-------------------------------------------------------------------
                    ||||||||| |||||||||||||| ||| | || ||||| ||||| ||||||||||| |||||  |||| || || || |||| |    |   |    |    |    |||||  |  |    || |    | | |  |||| ||   | ||| |  | || |||   ||||       ||  | ||                                                                   
--------------------GATGATGAGTGACTACAAGGTGGAGATGATCAATGATGGCATGCAAGAGTTCTTTGTCGAATTCAGTGGACCCAAAGACAgtaagtaactcaattcgtcccgtgaataatttaaatcatagagttttgattctgttttttcttgttcttgctgctgatgatgatcatcatagggttttgtgtcaatttcaacttatcagtatcaacttgttaatttttggtgattttatctctgtgtgtttgtactatggacag

upper sequence: GRMZM2G150867_T03 (Zea mays), 5'ss of exon 1
lower sequence: EFJ34378 (Selaginella moellendorffii), 5'ss of exon 2
CTGCATGTTGATGCCTGCAGGATGATGAGCGACTACAAGGTGGATATGGTGAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggttttttcacacaaaaggccgatttaggttttctttctagggccg--atgcttctgtagctcctgatttataatctatatagaccgaattgcaagtt
                    ||||||||| |||||||||||||| ||||| |||||||||||| | |||||   ||| || || | ||| |||   || |||| |   |   |||         |  ||    || |||  ||  ||      ||| |||||  |||  |  || |  |  | | |||      | |  |||
--------------------GATGATGAGTGACTACAAGGTGGAGATGGTAAACGATGGGATGAACGAGTTTAATGTGGAGTTCCATGGACCTCGGGATAgtaagtcctccacactgccctcttctcttcctcttgtctccctgtggttttcgtgcctctgtgtctctcggcttgt--ttgaaagagagatttcttcttgtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6056913|gb|AW091318.1|AW091318
EST:     GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA                         GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: gi|211281984|gb|FL018037.1|FL018037
EST:     GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA                         GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: gi|12971358|gb|BG267442.1|BG267442
EST:     TTGAATTTCGTGGGCCTAACGAAA                         GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
genomic: TTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: gi|84980137|gb|DW530486.1|DW530486
EST:     GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA                         GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: gi|32911041|gb|CF015853.1|CF015853
EST:     GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA                         GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
EST: gi|5455873|gb|AI833563.1|AI833563
EST:     GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAA                         GCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT
genomic: GAACGATGGGATGCAGGAGTTCTTTGTTGAATTTCGTGGGCCTAACGAAAgtacggtttt ... aattcaatagGCATTTATCAAGGAGGTATATGGAGGGTTAGAGTAGAACTGCCAGATGCGT