1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTCGCCGCCCGCGCCAATACTTTCCTCTGCCGGGGCTGCACCGGCAGCGCGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatccctagtcgctctatgttctgcgggttcgtttcgtgcggcgagatctccccattttttctctgccgcggctgcgggtttcgattcataaat...
species | Zea mays |
transcript | GRMZM2G150251_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|32797772|gb|CD950008.1|CD950008
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: GATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|32803071|gb|CD955307.1|CD955307
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: GATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|60349110|gb|DN216083.1|DN216083
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCAACAGCAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|32796372|gb|CD948608.1|CD948608
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: GATCCGGTGACTGACCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|76020573|gb|DT947743.1|DT947743
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211139849|gb|FK978970.1|FK978970
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: GGGGTCGACAACAGCTCGAGATCCGGTGACTGATACTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|76282341|gb|DV021909.1|DV021909
genomic: GGGGTCGACAACAGCTCGAGATCCGGTGACTGAT-CTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211139848|gb|FK978969.1|FK978969
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211138916|gb|FK978964.1|FK978964
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211138918|gb|FK978966.1|FK978966
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211138912|gb|FK978960.1|FK978960
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211139847|gb|FK978968.1|FK978968
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|30031840|gb|CB833691.1|CB833691
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211138913|gb|FK978961.1|FK978961
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211138914|gb|FK978962.1|FK978962
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211138919|gb|FK978967.1|FK978967
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|32800677|gb|CD952913.1|CD952913
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: GATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|211138917|gb|FK978965.1|FK978965
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATGEST: gi|93282675|gb|EB674939.1|EB674939
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCGCCGCCCGCGCCAATACTTTCCTCTGCCGGGGCTGCACCGGCAGCGCGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatccctagtcgctctatgttctgcgggttcgtttcgtgcggcgagatctccccattttttctctgccgcggctgcgggtttcgattcataaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC