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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGCCGCCCGCGCCAATACTTTCCTCTGCCGGGGCTGCACCGGCAGCGCGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatccctagtcgctctatgttctgcgggttcgtttcgtgcggcgagatctccccattttttctctgccgcggctgcgggtttcgattcataaat...

Basic information

species Zea mays
transcript GRMZM2G150251_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32797772|gb|CD950008.1|CD950008
EST:     GATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|32803071|gb|CD955307.1|CD955307
EST:     GATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211139847|gb|FK978968.1|FK978968
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|32796372|gb|CD948608.1|CD948608
EST:     GATCCGGTGACTGACCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138918|gb|FK978966.1|FK978966
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138912|gb|FK978960.1|FK978960
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|78123105|gb|DV541489.1|DV541489
EST:     CGGGGTCGACAACAGCTCAAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAAATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211139849|gb|FK978970.1|FK978970
EST:     GGGGTCGACAACAGCTCGAGATCCGGTGACTGATACTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GGGGTCGACAACAGCTCGAGATCCGGTGACTGAT-CTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|93282675|gb|EB674939.1|EB674939
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211139848|gb|FK978969.1|FK978969
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138916|gb|FK978964.1|FK978964
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|76020573|gb|DT947743.1|DT947743
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138913|gb|FK978961.1|FK978961
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138914|gb|FK978962.1|FK978962
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|91870069|gb|EB400685.1|EB400685
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|30031840|gb|CB833691.1|CB833691
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|60349110|gb|DN216083.1|DN216083
EST:     CGGGGTCAACAGCAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138919|gb|FK978967.1|FK978967
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|32800677|gb|CD952913.1|CD952913
EST:     GATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: GATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|211138917|gb|FK978965.1|FK978965
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
EST: gi|76282341|gb|DV021909.1|DV021909
EST:     CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCG                         GGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG
genomic: CGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatc ... atcttggcagGGCATCTTGCTAGTCTTCTTCCAGATTGCTTCCTAATAATGATGACACATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCGCCGCCCGCGCCAATACTTTCCTCTGCCGGGGCTGCACCGGCAGCGCGGGGTCGACAACAGCTCGAGATCCGGTGACTGATCTCCTTTGTTTCTCGgtgagtaatccctagtcgctctatgttctgcgggttcgtttcgtgcggcgagatctccccattttttctctgccgcggctgcgggtttcgattcataaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC