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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACGCCAGCCGCCTCTCGCAGCTGCTCGGCGTCCCGCACATCGCCACCGGCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAGgtaaatatcagtctcgtggattacctggcactgagataggttaaccgggttgatggatccggtgcgccatgttctagttcgctcgtaactatgttgcgtg...

Basic information

species Zea mays
transcript GRMZM2G150014_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150014_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g57540.1 (Oryza sativa), 5'ss of exon 1
CTACGCCAGCCGCCTCTCGCAGCTGCTCGGCGTCCCGCACATCGCCACCGGCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAGgtaaatatcagtctcgtggattacctggcactgagataggttaaccgggttgatggatccggtgcgccatgttctagttcgctcgtaactatgttgcgtg
|||||||||||||||||||||| ||||| |||| || ||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||| |  |||| ||   | | |||      |  ||  | ||    | |  |   |   | || |  ||          || |   | | | |  |||  |    | | |
CTACGCCAGCCGCCTCTCGCAGATGCTCCGCGTGCCCCACATCGCCACCGGCGATCTCGTCCGCGACGCCCTCGCCTCCCCGGGCCCCTTCTCCGAGCAGgtgaaacgccgcctccgtttctctcttcctctctcttggccttcgcccttcgaggtctcacaatgatggtgatggggatggatgataatgaacaagagag

upper sequence: GRMZM2G150014_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA03G33390.1 (Glycine max), 5'ss of exon 1
CTACGCCAGCCGCCTCTCGCAGCTGCTCGGCGTCCCGCACATCGCCACCGGCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAGgta--aatatcagtctcgtggattacctggcactgagataggttaaccgggttgatggatccggtgcgccatgttctagttcgctcgtaactatgttgcgtg
||||||||| |||||||   | || ||||||||||| ||||||||||||||||| ||||||||| |||  || ||| ||   |||||| | ||   | ||||   |    |  ||   |   || | |         | || || |     |       |     | |   ||||   ||| | | ||   |   ||  |  
CTACGCCAGTCGCCTCTGCAACCTCCTCGGCGTCCCTCACATCGCCACCGGCGATCTCGTCCGCCACGAGCTCGCCTCCAACGGCCCCCTTTCTTCCCAGgtcccatcccccctcctctctctttctttctctctctagagattcaaaatctcacctttttattagtgttttgtt--ggtttgattgtctttgaatttagca

upper sequence: GRMZM2G150014_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G19880.1 (Glycine max), 5'ss of exon 1
CTACGCCAGCCGCCTCTCGCAGCTGCTCGGCGTCCCGCACATCGCCACCGGCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAGgta--aatatcagtctcgtggattacctggcactgaga----taggttaaccgggttgatggatccggtgcgc-catgttctagttcgctcgtaactatgttgcgtg
 ||||| || ||||||||| | || ||||||||||| ||||||||||||||||| ||||| |||||||  ||  || || |||||||| | ||   | ||||     | |   |||  |   |   ||      |       |   ||| |  |||| ||   |     ||     || || || |   |   |  | ||       
GTACGCTAGTCGCCTCTCGAACCTCCTCGGCGTCCCTCACATCGCCACCGGCGATCTCGTTCGCGACGAACTCACCTCCTCTGGCCCCCTTTCTTCCCAGgttttgttgttcttcttcttcctcctcttttttcgttcactttgaattagctaggttaatttttttaacgcaaatttggtcaaggttattgaaatttctg-------

upper sequence: GRMZM2G150014_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G05530.1 (Glycine max), 5'ss of exon 1
CTACGCCAGCCGCCTCTCGCAGCTGCTCGGCGTCCCGCACATCGCCACCGGCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAGgtaaatatcagtctcgtggattacctggcactgagataggttaaccgggttgatg--gatccggtgcgccatgttctagttcgctcgtaactatgttgcgtg-
 ||||| || ||||| ||  | || ||||||||||| ||||||||||||||||| ||||| |||||||  || ||| || ||| |||| | ||   | ||||   | |   |||      | || | | | | |  ||| ||||      | | |   ||  |||      | ||  | ||    |||| |   |  |||   
GTACGCTAGTCGCCTGTCCAACCTCCTCGGCGTCCCTCACATCGCCACCGGCGATCTCGTTCGCGACGAACTCGCCTCCTCTGACCCCCTTTCTTCCCAGgttc-tcttcttcttcctcttcactttgaattaac-tagattaatttttgtaacgcaaatttggtcaaggttattgaaatttctgcgta-cggcgcagcgctt

upper sequence: GRMZM2G150014_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv13s0067g03360.t01 (Vitis vinifera), 5'ss of exon 1
CTACGCCAGCCGCCTCTCGCAGCTGCTCGGCGTCCCGCACATCGCCACCGGCGACCTCGTCCGCGACGCCCTGGCCACCCCTGGCCCCTTCTCCAACAAGgtaaatatcagtctc-gtggattacctggcactgagataggttaaccgggttgatggatccggtgcgc-catgttctagttcgctcgtaactatgttgcgtg
|||||||  ||||||| |    || ||||||||||| ||||||||||||||||| || |||||||| |  || ||  || | || ||| || |     |||| |||    || || ||   ||   | |    | ||     |      |||  |   |   ||  |    ||    | ||      |    |  ||| || 
CTACGCCTCCCGCCTCACCGCTCTCCTCGGCGTCCCCCACATCGCCACCGGCGATCTTGTCCGCGAGGAGCTCGCGTCCTCCGGTCCCCTCGCTTCGCAGgtgaattagggtttccgtttcttttttagtttcgtgaatttctttttacgttattatgtttcgtttgtgtgtggaaaaattaagatctgga-actttgggt-